Variant report

Variant	rs34118174
Chromosome Location	chr10:116207642-116207643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2483576	1.00[EUR][1000 genomes]
rs34542287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57307018	1.00[EUR][1000 genomes]
rs7091500	1.00[AMR][1000 genomes]
rs7096046	1.00[AMR][1000 genomes]
rs74158013	1.00[EUR][1000 genomes]
rs74158015	1.00[EUR][1000 genomes]
rs7899481	1.00[AMR][1000 genomes]
rs7899950	1.00[EUR][1000 genomes]
rs7904189	1.00[AMR][1000 genomes]
rs7910687	1.00[AMR][1000 genomes]
rs7916756	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116187000-116210400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:116188000-116211000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:116189200-116231000	Strong transcription	Primary T cells from cord blood	blood
4	chr10:116189400-116211800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr10:116189800-116232200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:116190200-116218600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:116190800-116214200	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr10:116192200-116230600	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr10:116192800-116212400	Strong transcription	Left Ventricle	heart
10	chr10:116192800-116213400	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr10:116192800-116231000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr10:116193000-116208200	Strong transcription	HSMMtube	muscle
13	chr10:116193200-116210800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:116193600-116230800	Weak transcription	GM12878-XiMat	blood
15	chr10:116193800-116211600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:116194000-116215800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:116194400-116251600	Weak transcription	Small Intestine	intestine
18	chr10:116196600-116213400	Weak transcription	NHEK	skin
19	chr10:116198600-116214600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:116198800-116214200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:116198800-116226000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:116199000-116218000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:116199000-116231000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:116199200-116209200	Weak transcription	Brain Substantia Nigra	brain
25	chr10:116199200-116224600	Weak transcription	HSMM	muscle
26	chr10:116199200-116243400	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:116199400-116213400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr10:116199600-116244600	Weak transcription	A549	lung
29	chr10:116199800-116249200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:116200000-116209200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:116200200-116230800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:116200200-116231000	Weak transcription	Brain Angular Gyrus	brain
33	chr10:116200400-116210800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr10:116200600-116221800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:116200800-116209200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:116200800-116210600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:116200800-116222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:116200800-116224600	Weak transcription	Aorta	Aorta
39	chr10:116200800-116232400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr10:116201000-116229000	Weak transcription	HMEC	breast
41	chr10:116201000-116232400	Weak transcription	Colonic Mucosa	Colon
42	chr10:116201000-116242400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:116201200-116218200	Weak transcription	Fetal Brain Male	brain
44	chr10:116201800-116208200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:116201800-116216000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr10:116202200-116229000	Weak transcription	Fetal Heart	heart
47	chr10:116202200-116231600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:116202400-116213000	Weak transcription	Fetal Lung	lung
49	chr10:116202400-116221800	Weak transcription	Hela-S3	cervix
50	chr10:116202600-116213200	Weak transcription	Stomach Mucosa	stomach

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