Variant report

Variant	rs74158015
Chromosome Location	chr10:116271898-116271899
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116271430..116273039-chr10:116273983..116275755,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2483576	1.00[EUR][1000 genomes]
rs34118174	1.00[EUR][1000 genomes]
rs34542287	1.00[EUR][1000 genomes]
rs57307018	1.00[EUR][1000 genomes]
rs74158013	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7899950	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv3488893	chr10:116269312-116272560	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116225600-116278800	Weak transcription	HSMM	muscle
2	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
3	chr10:116259600-116272000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:116259800-116276800	Weak transcription	Thymus	Thymus
5	chr10:116260000-116272800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr10:116260400-116272800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr10:116261200-116279400	Weak transcription	GM12878-XiMat	blood
8	chr10:116262600-116274800	Weak transcription	Fetal Thymus	thymus
9	chr10:116265400-116279400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:116265600-116274800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:116265600-116275200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:116266000-116275000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr10:116266000-116276600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:116267600-116274800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:116267600-116275000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:116267600-116278800	Weak transcription	Colonic Mucosa	Colon
17	chr10:116267600-116279200	Weak transcription	Aorta	Aorta
18	chr10:116267800-116273200	Weak transcription	Pancreas	Pancrea
19	chr10:116267800-116274800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:116267800-116278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:116268000-116272800	Weak transcription	Fetal Kidney	kidney
22	chr10:116268000-116273000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr10:116268000-116273400	Weak transcription	Liver	Liver
24	chr10:116268000-116277600	Weak transcription	A549	lung
25	chr10:116268000-116278800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:116268200-116272600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr10:116268200-116276200	Weak transcription	Brain Substantia Nigra	brain
28	chr10:116268200-116276600	Weak transcription	Fetal Stomach	stomach
29	chr10:116268200-116278800	Weak transcription	Fetal Intestine Large	intestine
30	chr10:116268200-116281600	Weak transcription	Brain Anterior Caudate	brain
31	chr10:116268400-116272200	Genic enhancers	Primary T cells fromperipheralblood	blood
32	chr10:116268400-116276800	Weak transcription	Fetal Intestine Small	intestine
33	chr10:116268400-116277000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:116268600-116272800	Weak transcription	Fetal Lung	lung
35	chr10:116268600-116273200	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:116268600-116277000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:116268800-116273200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr10:116269000-116273400	Weak transcription	Fetal Heart	heart
39	chr10:116269000-116275000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:116269000-116276400	Weak transcription	Adipose Nuclei	Adipose
41	chr10:116269000-116278000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr10:116269200-116273200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr10:116269200-116273400	Weak transcription	Right Atrium	heart
44	chr10:116269200-116274800	Weak transcription	Esophagus	oesophagus
45	chr10:116269200-116275000	Weak transcription	Gastric	stomach
46	chr10:116269200-116278800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:116269400-116273400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:116269400-116273800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr10:116269400-116275200	Weak transcription	Lung	lung
50	chr10:116269600-116273200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links