Variant report

Variant	rs57307018
Chromosome Location	chr10:116199721-116199722
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AFAP1L2-1	chr10:116199376-116199848	NONHSAT016456

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2483576	1.00[EUR][1000 genomes]
rs34118174	1.00[EUR][1000 genomes]
rs34542287	1.00[EUR][1000 genomes]
rs73352029	0.91[AFR][1000 genomes]
rs74158013	1.00[EUR][1000 genomes]
rs74158015	1.00[EUR][1000 genomes]
rs7899950	1.00[EUR][1000 genomes]
rs7907612	0.87[AFR][1000 genomes]
rs7919465	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116187000-116210400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:116187200-116203000	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:116187600-116204600	Weak transcription	Spleen	Spleen
4	chr10:116187800-116199800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:116187800-116207600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:116188000-116211000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:116189200-116231000	Strong transcription	Primary T cells from cord blood	blood
8	chr10:116189400-116211800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:116189800-116207600	Strong transcription	Primary B cells from cord blood	blood
10	chr10:116189800-116232200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:116190200-116218600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:116190400-116205400	Strong transcription	Liver	Liver
13	chr10:116190800-116214200	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:116191800-116200400	Weak transcription	Fetal Brain Male	brain
15	chr10:116191800-116206400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr10:116192000-116205600	Strong transcription	Fetal Muscle Leg	muscle
17	chr10:116192200-116202600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:116192200-116230600	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:116192400-116199800	Strong transcription	Brain Anterior Caudate	brain
20	chr10:116192800-116205000	Strong transcription	Adipose Nuclei	Adipose
21	chr10:116192800-116205400	Strong transcription	Fetal Intestine Large	intestine
22	chr10:116192800-116212400	Strong transcription	Left Ventricle	heart
23	chr10:116192800-116213400	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr10:116192800-116231000	Strong transcription	Primary B cells from peripheral blood	blood
25	chr10:116193000-116200800	Strong transcription	Esophagus	oesophagus
26	chr10:116193000-116201000	Strong transcription	Right Ventricle	heart
27	chr10:116193000-116201600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:116193000-116202200	Strong transcription	Fetal Stomach	stomach
29	chr10:116193000-116205400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:116193000-116205800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:116193000-116208200	Strong transcription	HSMMtube	muscle
32	chr10:116193200-116200800	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:116193200-116201000	Strong transcription	Duodenum Mucosa	Duodenum
34	chr10:116193200-116205600	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr10:116193200-116210800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr10:116193400-116201000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:116193600-116200800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:116193600-116202200	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr10:116193600-116204800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:116193600-116205800	Strong transcription	Fetal Muscle Trunk	muscle
41	chr10:116193600-116230800	Weak transcription	GM12878-XiMat	blood
42	chr10:116193800-116201000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:116193800-116211600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:116194000-116201200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:116194000-116202200	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:116194000-116205400	Strong transcription	Ovary	ovary
47	chr10:116194000-116215800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr10:116194200-116200800	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:116194200-116205400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr10:116194400-116201800	Strong transcription	HUES64 Cell Line	embryonic stem cell

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