Variant report

Variant	rs7907612
Chromosome Location	chr10:116197128-116197129
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116063343..116064353-chr10:116196632..116198429,8	MCF-7	breast:
2	chr10:116188336..116192373-chr10:116194440..116198221,4	K562	blood:
3	chr10:116061287..116064171-chr10:116196591..116199135,2	MCF-7	breast:
4	chr10:116063372..116064901-chr10:116197070..116198179,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169129	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11815817	1.00[AMR][1000 genomes]
rs55691983	1.00[AMR][1000 genomes]
rs55980013	1.00[AMR][1000 genomes]
rs56134533	1.00[AMR][1000 genomes]
rs56176912	1.00[AMR][1000 genomes]
rs57307018	0.87[AFR][1000 genomes]
rs58927971	1.00[AMR][1000 genomes]
rs59580984	1.00[AMR][1000 genomes]
rs73352029	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74157596	1.00[AMR][1000 genomes]
rs74157602	1.00[AMR][1000 genomes]
rs74158004	1.00[AMR][1000 genomes]
rs74158005	1.00[AMR][1000 genomes]
rs74158006	1.00[AMR][1000 genomes]
rs74160404	1.00[AMR][1000 genomes]
rs74160405	1.00[AMR][1000 genomes]
rs7895119	1.00[AMR][1000 genomes]
rs7895649	1.00[AMR][1000 genomes]
rs7911224	1.00[AMR][1000 genomes]
rs7919465	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116186600-116198200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:116187000-116210400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:116187200-116197800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr10:116187200-116203000	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:116187400-116198400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:116187600-116198000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:116187600-116198400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:116187600-116198600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:116187600-116199000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:116187600-116204600	Weak transcription	Spleen	Spleen
11	chr10:116187800-116198000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:116187800-116198000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:116187800-116198000	Weak transcription	HSMM	muscle
14	chr10:116187800-116199800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:116187800-116207600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr10:116188000-116198200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:116188000-116198200	Weak transcription	Stomach Mucosa	stomach
18	chr10:116188000-116211000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:116189200-116197800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:116189200-116231000	Strong transcription	Primary T cells from cord blood	blood
21	chr10:116189400-116211800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:116189800-116207600	Strong transcription	Primary B cells from cord blood	blood
23	chr10:116189800-116232200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:116190000-116197400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:116190200-116218600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:116190400-116198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:116190400-116205400	Strong transcription	Liver	Liver
28	chr10:116190800-116214200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:116191400-116198400	Weak transcription	A549	lung
30	chr10:116191800-116197800	Weak transcription	HUVEC	blood vessel
31	chr10:116191800-116200400	Weak transcription	Fetal Brain Male	brain
32	chr10:116191800-116206400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr10:116192000-116205600	Strong transcription	Fetal Muscle Leg	muscle
34	chr10:116192200-116197800	Weak transcription	HMEC	breast
35	chr10:116192200-116202600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:116192200-116230600	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr10:116192400-116198400	Weak transcription	Aorta	Aorta
38	chr10:116192400-116199800	Strong transcription	Brain Anterior Caudate	brain
39	chr10:116192800-116205000	Strong transcription	Adipose Nuclei	Adipose
40	chr10:116192800-116205400	Strong transcription	Fetal Intestine Large	intestine
41	chr10:116192800-116212400	Strong transcription	Left Ventricle	heart
42	chr10:116192800-116213400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr10:116192800-116231000	Strong transcription	Primary B cells from peripheral blood	blood
44	chr10:116193000-116198200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr10:116193000-116200800	Strong transcription	Esophagus	oesophagus
46	chr10:116193000-116201000	Strong transcription	Right Ventricle	heart
47	chr10:116193000-116201600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:116193000-116202200	Strong transcription	Fetal Stomach	stomach
49	chr10:116193000-116205400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:116193000-116205800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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