Variant report

Variant	rs74160404
Chromosome Location	chr10:116158931-116158932
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11815817	1.00[AMR][1000 genomes]
rs55691983	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55980013	1.00[AMR][1000 genomes]
rs56134533	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56176912	1.00[AMR][1000 genomes]
rs58927971	1.00[AMR][1000 genomes]
rs59580984	1.00[AMR][1000 genomes]
rs73352029	1.00[AMR][1000 genomes]
rs74157596	1.00[AMR][1000 genomes]
rs74157602	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158004	1.00[AMR][1000 genomes]
rs74158005	1.00[AMR][1000 genomes]
rs74158006	1.00[AMR][1000 genomes]
rs74160405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7895119	1.00[AMR][1000 genomes]
rs7895649	1.00[AMR][1000 genomes]
rs7907612	1.00[AMR][1000 genomes]
rs7911224	1.00[AMR][1000 genomes]
rs7919465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116149000-116160000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:116151800-116162600	Weak transcription	Lung	lung
3	chr10:116153200-116162600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:116154000-116159200	Enhancers	Spleen	Spleen
5	chr10:116154200-116161200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:116156200-116161000	Enhancers	Fetal Lung	lung
7	chr10:116156600-116159600	Enhancers	Duodenum Mucosa	Duodenum
8	chr10:116156600-116159600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr10:116156800-116162200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:116157400-116159200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:116157400-116159400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:116157400-116160800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr10:116157600-116160600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr10:116157600-116161000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:116157600-116161000	Enhancers	Placenta	Placenta
16	chr10:116157600-116161000	Weak transcription	Right Atrium	heart
17	chr10:116157600-116161400	Enhancers	Ovary	ovary
18	chr10:116157800-116159000	Weak transcription	HSMM	muscle
19	chr10:116157800-116159000	Weak transcription	HSMMtube	muscle
20	chr10:116157800-116159600	Enhancers	NHLF	lung
21	chr10:116157800-116161800	Enhancers	HMEC	breast
22	chr10:116157800-116162600	Enhancers	Colon Smooth Muscle	Colon
23	chr10:116157800-116162600	Weak transcription	Esophagus	oesophagus
24	chr10:116158200-116159000	Weak transcription	NHDF-Ad	bronchial
25	chr10:116158200-116159200	Enhancers	Colonic Mucosa	Colon
26	chr10:116158200-116159600	Weak transcription	Stomach Mucosa	stomach
27	chr10:116158200-116159800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:116158200-116159800	Enhancers	Pancreas	Pancrea
29	chr10:116158400-116159000	Enhancers	Right Ventricle	heart
30	chr10:116158400-116159200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:116158400-116159200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
32	chr10:116158400-116159200	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
33	chr10:116158400-116159800	Weak transcription	GM12878-XiMat	blood
34	chr10:116158400-116160800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:116158600-116159000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:116158600-116159400	Bivalent Enhancer	Brain Hippocampus Middle	brain
37	chr10:116158600-116159400	Enhancers	Stomach Smooth Muscle	stomach
38	chr10:116158600-116159800	Enhancers	Fetal Kidney	kidney
39	chr10:116158800-116159000	Bivalent Enhancer	Brain Germinal Matrix	brain
40	chr10:116158800-116159200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr10:116158800-116159200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:116158800-116159400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:116158800-116159400	Enhancers	A549	lung
44	chr10:116158800-116159600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:116158800-116159600	Weak transcription	NHEK	skin
46	chr10:116158800-116159800	Weak transcription	Fetal Thymus	thymus
47	chr10:116158800-116160400	Enhancers	Brain Anterior Caudate	brain
48	chr10:116158800-116162000	Enhancers	Fetal Muscle Leg	muscle
49	chr10:116158800-116162400	Enhancers	Fetal Stomach	stomach

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