Variant report

Variant	rs7911224
Chromosome Location	chr10:116224404-116224405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116224134..116225937-chr10:116285425..116288025,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000099204	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11813036	1.00[YRI][hapmap]
rs11815817	1.00[AMR][1000 genomes]
rs55691983	1.00[AMR][1000 genomes]
rs55980013	1.00[AMR][1000 genomes]
rs56134533	1.00[AMR][1000 genomes]
rs56176912	1.00[AMR][1000 genomes]
rs58927971	1.00[AMR][1000 genomes]
rs59580984	1.00[AMR][1000 genomes]
rs6585281	1.00[EUR][1000 genomes]
rs73352029	1.00[AMR][1000 genomes]
rs74157596	1.00[AMR][1000 genomes]
rs74157602	1.00[AMR][1000 genomes]
rs74158004	1.00[AMR][1000 genomes]
rs74158005	1.00[AMR][1000 genomes]
rs74158006	1.00[AMR][1000 genomes]
rs74160404	1.00[AMR][1000 genomes]
rs74160405	1.00[AMR][1000 genomes]
rs7895119	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs7895649	1.00[AMR][1000 genomes]
rs7907612	1.00[AMR][1000 genomes]
rs7919465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116189200-116231000	Strong transcription	Primary T cells from cord blood	blood
2	chr10:116189800-116232200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:116192200-116230600	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr10:116192800-116231000	Strong transcription	Primary B cells from peripheral blood	blood
5	chr10:116193600-116230800	Weak transcription	GM12878-XiMat	blood
6	chr10:116194400-116251600	Weak transcription	Small Intestine	intestine
7	chr10:116198800-116226000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr10:116199000-116231000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:116199200-116224600	Weak transcription	HSMM	muscle
10	chr10:116199200-116243400	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:116199600-116244600	Weak transcription	A549	lung
12	chr10:116199800-116249200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:116200200-116230800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:116200200-116231000	Weak transcription	Brain Angular Gyrus	brain
15	chr10:116200800-116224600	Weak transcription	Aorta	Aorta
16	chr10:116200800-116232400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr10:116201000-116229000	Weak transcription	HMEC	breast
18	chr10:116201000-116232400	Weak transcription	Colonic Mucosa	Colon
19	chr10:116201000-116242400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:116202200-116229000	Weak transcription	Fetal Heart	heart
21	chr10:116202200-116231600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:116204600-116232400	Weak transcription	Brain Anterior Caudate	brain
23	chr10:116205200-116228400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:116205600-116228200	Weak transcription	Spleen	Spleen
25	chr10:116206600-116232400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:116207000-116232800	Weak transcription	HUVEC	blood vessel
27	chr10:116209600-116232600	Weak transcription	Brain Substantia Nigra	brain
28	chr10:116211000-116232400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr10:116211200-116232200	Weak transcription	Fetal Kidney	kidney
30	chr10:116211400-116231800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr10:116212800-116229800	Strong transcription	Liver	Liver
32	chr10:116213000-116230800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr10:116213200-116226000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr10:116214200-116230800	Weak transcription	Stomach Mucosa	stomach
35	chr10:116214600-116230800	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr10:116214600-116263600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr10:116216600-116231600	Weak transcription	Psoas Muscle	Psoas
38	chr10:116217200-116230800	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr10:116217400-116229800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:116217600-116230600	Strong transcription	Primary B cells from cord blood	blood
41	chr10:116218200-116226600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:116218400-116249200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr10:116218600-116225400	Strong transcription	Ovary	ovary
44	chr10:116218600-116230800	Strong transcription	HepG2	liver
45	chr10:116218800-116224600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr10:116218800-116231000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr10:116219000-116230800	Weak transcription	Pancreas	Pancrea
48	chr10:116219000-116232000	Strong transcription	Left Ventricle	heart
49	chr10:116219200-116226600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:116219800-116226400	Strong transcription	Adipose Nuclei	Adipose

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