Variant report

Variant	rs74157596
Chromosome Location	chr10:116144088-116144089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116122844..116124914-chr10:116142653..116145639,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11815817	1.00[AMR][1000 genomes]
rs55691983	1.00[AMR][1000 genomes]
rs55980013	1.00[AMR][1000 genomes]
rs56134533	1.00[AMR][1000 genomes]
rs56176912	1.00[AMR][1000 genomes]
rs58927971	1.00[AMR][1000 genomes]
rs59580984	1.00[AMR][1000 genomes]
rs73352029	1.00[AMR][1000 genomes]
rs74157602	1.00[AMR][1000 genomes]
rs74158004	1.00[AMR][1000 genomes]
rs74158005	1.00[AMR][1000 genomes]
rs74158006	1.00[AMR][1000 genomes]
rs74160404	1.00[AMR][1000 genomes]
rs74160405	1.00[AMR][1000 genomes]
rs7895119	1.00[AMR][1000 genomes]
rs7895649	1.00[AMR][1000 genomes]
rs7907612	1.00[AMR][1000 genomes]
rs7911224	1.00[AMR][1000 genomes]
rs7919465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116117400-116151400	Weak transcription	Gastric	stomach
2	chr10:116127600-116148800	Weak transcription	Pancreas	Pancrea
3	chr10:116127600-116153000	Weak transcription	Aorta	Aorta
4	chr10:116128000-116147800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:116134000-116144800	Weak transcription	Right Ventricle	heart
6	chr10:116134000-116157600	Weak transcription	Colonic Mucosa	Colon
7	chr10:116136600-116148600	Weak transcription	Fetal Kidney	kidney
8	chr10:116137600-116148400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:116140000-116144400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:116140000-116148800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:116140000-116151200	Weak transcription	Fetal Thymus	thymus
12	chr10:116140200-116144400	Weak transcription	A549	lung
13	chr10:116140200-116144800	Weak transcription	Ovary	ovary
14	chr10:116140200-116152600	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:116140800-116146400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:116142400-116145200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:116143000-116145000	Strong transcription	HMEC	breast
18	chr10:116143200-116152600	Weak transcription	Fetal Intestine Small	intestine
19	chr10:116143400-116144200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:116143400-116144400	Enhancers	Fetal Muscle Leg	muscle
21	chr10:116143400-116144800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:116143400-116145200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:116143600-116144400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:116143600-116144400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:116143600-116144400	Strong transcription	NHEK	skin
26	chr10:116143600-116145400	Enhancers	Esophagus	oesophagus
27	chr10:116143600-116146600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr10:116143600-116146600	Genic enhancers	Spleen	Spleen
29	chr10:116143800-116144800	Enhancers	Brain Substantia Nigra	brain
30	chr10:116143800-116145000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:116143800-116145000	Enhancers	Brain Cingulate Gyrus	brain
32	chr10:116143800-116145000	Strong transcription	Stomach Smooth Muscle	stomach
33	chr10:116143800-116145200	Genic enhancers	Fetal Muscle Trunk	muscle
34	chr10:116143800-116145400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:116144000-116144200	Flanking Active TSS	Brain Angular Gyrus	brain
36	chr10:116144000-116145000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:116144000-116145400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:116144000-116145400	Genic enhancers	Fetal Stomach	stomach

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