Variant report

Variant	rs11815817
Chromosome Location	chr10:116194249-116194250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11813036	1.00[ASW][hapmap];1.00[LWK][hapmap];0.87[AFR][1000 genomes]
rs55691983	1.00[AMR][1000 genomes]
rs55980013	1.00[AMR][1000 genomes]
rs56134533	1.00[AMR][1000 genomes]
rs56176912	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58927971	1.00[AMR][1000 genomes]
rs59580984	1.00[AMR][1000 genomes]
rs73352029	1.00[AMR][1000 genomes]
rs74157596	1.00[AMR][1000 genomes]
rs74157602	1.00[AMR][1000 genomes]
rs74158004	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158005	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158006	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74160404	1.00[AMR][1000 genomes]
rs74160405	1.00[AMR][1000 genomes]
rs7895119	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7895649	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7907612	1.00[AMR][1000 genomes]
rs7911224	1.00[AMR][1000 genomes]
rs7919465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116180000-116196200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:116186600-116198200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:116186800-116194400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:116187000-116210400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:116187200-116197800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr10:116187200-116203000	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:116187400-116194400	Weak transcription	Fetal Heart	heart
8	chr10:116187400-116196400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:116187400-116198400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:116187600-116194400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:116187600-116194400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr10:116187600-116198000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:116187600-116198400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:116187600-116198600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:116187600-116199000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:116187600-116204600	Weak transcription	Spleen	Spleen
17	chr10:116187800-116196000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:116187800-116198000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:116187800-116198000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:116187800-116198000	Weak transcription	HSMM	muscle
21	chr10:116187800-116199800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:116187800-116207600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr10:116188000-116198200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:116188000-116198200	Weak transcription	Stomach Mucosa	stomach
25	chr10:116188000-116211000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:116188200-116194400	Weak transcription	Thymus	Thymus
27	chr10:116188600-116194400	Weak transcription	Fetal Intestine Small	intestine
28	chr10:116189200-116197800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:116189200-116231000	Strong transcription	Primary T cells from cord blood	blood
30	chr10:116189400-116194400	Weak transcription	Fetal Thymus	thymus
31	chr10:116189400-116211800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr10:116189800-116207600	Strong transcription	Primary B cells from cord blood	blood
33	chr10:116189800-116232200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:116190000-116197400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:116190200-116194600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr10:116190200-116218600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:116190400-116198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:116190400-116205400	Strong transcription	Liver	Liver
39	chr10:116190800-116194600	Weak transcription	Colonic Mucosa	Colon
40	chr10:116190800-116214200	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:116191400-116198400	Weak transcription	A549	lung
42	chr10:116191600-116195800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:116191800-116194600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:116191800-116195600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:116191800-116197800	Weak transcription	HUVEC	blood vessel
46	chr10:116191800-116200400	Weak transcription	Fetal Brain Male	brain
47	chr10:116191800-116206400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr10:116192000-116205600	Strong transcription	Fetal Muscle Leg	muscle
49	chr10:116192200-116197800	Weak transcription	HMEC	breast
50	chr10:116192200-116202600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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