Variant report

Variant	rs55691983
Chromosome Location	chr10:116156356-116156357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116151670..116155313-chr10:116155442..116158491,3	MCF-7	breast:
2	chr10:116154812..116157671-chr10:116168139..116169677,2	MCF-7	breast:
3	chr10:116152376..116153916-chr10:116156316..116158641,2	K562	blood:
4	chr10:116151729..116154077-chr10:116154696..116157816,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11815817	1.00[AMR][1000 genomes]
rs55980013	1.00[AMR][1000 genomes]
rs56134533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56176912	1.00[AMR][1000 genomes]
rs58927971	1.00[AMR][1000 genomes]
rs59580984	1.00[AMR][1000 genomes]
rs73352029	1.00[AMR][1000 genomes]
rs74157596	1.00[AMR][1000 genomes]
rs74157602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158004	1.00[AMR][1000 genomes]
rs74158005	1.00[AMR][1000 genomes]
rs74158006	1.00[AMR][1000 genomes]
rs74160404	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74160405	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7895119	1.00[AMR][1000 genomes]
rs7895649	1.00[AMR][1000 genomes]
rs7907612	1.00[AMR][1000 genomes]
rs7911224	1.00[AMR][1000 genomes]
rs7919465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116134000-116157600	Weak transcription	Colonic Mucosa	Colon
2	chr10:116146400-116157000	Enhancers	HMEC	breast
3	chr10:116149000-116160000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr10:116151600-116157000	Enhancers	Fetal Muscle Leg	muscle
5	chr10:116151600-116158400	Enhancers	GM12878-XiMat	blood
6	chr10:116151800-116162600	Weak transcription	Lung	lung
7	chr10:116152800-116156600	Enhancers	Brain Anterior Caudate	brain
8	chr10:116152800-116158800	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:116153200-116157000	Enhancers	Brain Substantia Nigra	brain
10	chr10:116153200-116162600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:116153600-116157400	Weak transcription	Fetal Kidney	kidney
12	chr10:116153800-116157200	Weak transcription	A549	lung
13	chr10:116154000-116156600	Weak transcription	Right Atrium	heart
14	chr10:116154000-116159200	Enhancers	Spleen	Spleen
15	chr10:116154200-116156600	Weak transcription	Ovary	ovary
16	chr10:116154200-116161200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:116154600-116157200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:116154600-116157600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:116154800-116156600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr10:116154800-116157000	Weak transcription	Fetal Thymus	thymus
21	chr10:116154800-116157400	Weak transcription	Esophagus	oesophagus
22	chr10:116155000-116156400	Weak transcription	Fetal Stomach	stomach
23	chr10:116155000-116156400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:116155000-116156600	Enhancers	Brain Hippocampus Middle	brain
25	chr10:116155000-116156600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:116155200-116157400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:116155200-116157600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:116155600-116157000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:116155600-116157400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:116155600-116158200	Genic enhancers	NHEK	skin
31	chr10:116155600-116158400	Weak transcription	Right Ventricle	heart
32	chr10:116155800-116156800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:116155800-116157400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:116155800-116157400	Weak transcription	Brain Angular Gyrus	brain
35	chr10:116155800-116157600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr10:116155800-116157600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr10:116156200-116156600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:116156200-116156600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
39	chr10:116156200-116156800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:116156200-116156800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
41	chr10:116156200-116156800	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr10:116156200-116157200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr10:116156200-116158800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:116156200-116161000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links