Variant report

Variant	rs74158004
Chromosome Location	chr10:116203801-116203802
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:116203700-116203850	SAEC	small airway:	n/a	n/a
2	POLR2A	chr10:116203676-116204148	Hela-S3	cervix:	n/a	n/a
3	CTCF	chr10:116203760-116203910	GM12866	blood:	n/a	n/a

Variant related genes	Relation type
ABLIM1	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11813036	0.90[AFR][1000 genomes]
rs11815817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55691983	1.00[AMR][1000 genomes]
rs55980013	1.00[AMR][1000 genomes]
rs56134533	1.00[AMR][1000 genomes]
rs56176912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58927971	1.00[AMR][1000 genomes]
rs59580984	1.00[AMR][1000 genomes]
rs73352029	1.00[AMR][1000 genomes]
rs74157596	1.00[AMR][1000 genomes]
rs74157602	1.00[AMR][1000 genomes]
rs74158005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74160404	1.00[AMR][1000 genomes]
rs74160405	1.00[AMR][1000 genomes]
rs7895119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7895649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7907612	1.00[AMR][1000 genomes]
rs7911224	1.00[AMR][1000 genomes]
rs7919465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116187000-116210400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:116187600-116204600	Weak transcription	Spleen	Spleen
3	chr10:116187800-116207600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:116188000-116211000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:116189200-116231000	Strong transcription	Primary T cells from cord blood	blood
6	chr10:116189400-116211800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr10:116189800-116207600	Strong transcription	Primary B cells from cord blood	blood
8	chr10:116189800-116232200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:116190200-116218600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:116190400-116205400	Strong transcription	Liver	Liver
11	chr10:116190800-116214200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:116191800-116206400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr10:116192000-116205600	Strong transcription	Fetal Muscle Leg	muscle
14	chr10:116192200-116230600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:116192800-116205000	Strong transcription	Adipose Nuclei	Adipose
16	chr10:116192800-116205400	Strong transcription	Fetal Intestine Large	intestine
17	chr10:116192800-116212400	Strong transcription	Left Ventricle	heart
18	chr10:116192800-116213400	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr10:116192800-116231000	Strong transcription	Primary B cells from peripheral blood	blood
20	chr10:116193000-116205400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:116193000-116205800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:116193000-116208200	Strong transcription	HSMMtube	muscle
23	chr10:116193200-116205600	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr10:116193200-116210800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr10:116193600-116204800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:116193600-116205800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr10:116193600-116230800	Weak transcription	GM12878-XiMat	blood
28	chr10:116193800-116211600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:116194000-116205400	Strong transcription	Ovary	ovary
30	chr10:116194000-116215800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:116194200-116205400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr10:116194400-116205200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:116194400-116205400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr10:116194400-116205800	Strong transcription	Fetal Intestine Small	intestine
35	chr10:116194400-116251600	Weak transcription	Small Intestine	intestine
36	chr10:116196600-116213400	Weak transcription	NHEK	skin
37	chr10:116197800-116205600	Strong transcription	Stomach Smooth Muscle	stomach
38	chr10:116198600-116214600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:116198800-116206400	Weak transcription	Fetal Brain Female	brain
40	chr10:116198800-116214200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:116198800-116226000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:116199000-116218000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr10:116199000-116231000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr10:116199200-116204600	Weak transcription	Pancreas	Pancrea
45	chr10:116199200-116209200	Weak transcription	Brain Substantia Nigra	brain
46	chr10:116199200-116224600	Weak transcription	HSMM	muscle
47	chr10:116199200-116243400	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:116199400-116213400	Weak transcription	Rectal Smooth Muscle	rectum
49	chr10:116199600-116244600	Weak transcription	A549	lung
50	chr10:116199800-116205800	Weak transcription	HUVEC	blood vessel

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