Variant report

Variant	rs7096046
Chromosome Location	chr10:116269663-116269664
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116265784..116270126-chr10:116277666..116281304,6	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34118174	1.00[AMR][1000 genomes]
rs34542287	1.00[AMR][1000 genomes]
rs7091500	1.00[AMR][1000 genomes]
rs73353741	1.00[AFR][1000 genomes]
rs7899481	1.00[AMR][1000 genomes]
rs7904189	1.00[AMR][1000 genomes]
rs7910687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7916756	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv3488893	chr10:116269312-116272560	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116225600-116278800	Weak transcription	HSMM	muscle
2	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
3	chr10:116258000-116271400	Enhancers	Stomach Mucosa	stomach
4	chr10:116259600-116272000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:116259800-116276800	Weak transcription	Thymus	Thymus
6	chr10:116260000-116269800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:116260000-116272800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr10:116260400-116272800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:116261200-116279400	Weak transcription	GM12878-XiMat	blood
10	chr10:116262600-116274800	Weak transcription	Fetal Thymus	thymus
11	chr10:116264000-116271600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:116265000-116271800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr10:116265400-116271600	Weak transcription	Psoas Muscle	Psoas
14	chr10:116265400-116279400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:116265600-116274800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:116265600-116275200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:116266000-116275000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr10:116266000-116276600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:116266600-116269800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:116267000-116269800	Enhancers	Ovary	ovary
21	chr10:116267600-116274800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:116267600-116275000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:116267600-116278800	Weak transcription	Colonic Mucosa	Colon
24	chr10:116267600-116279200	Weak transcription	Aorta	Aorta
25	chr10:116267800-116271400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:116267800-116271600	Weak transcription	HMEC	breast
27	chr10:116267800-116271600	Weak transcription	NHEK	skin
28	chr10:116267800-116273200	Weak transcription	Pancreas	Pancrea
29	chr10:116267800-116274800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:116267800-116278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:116268000-116271600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:116268000-116272800	Weak transcription	Fetal Kidney	kidney
33	chr10:116268000-116273000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr10:116268000-116273400	Weak transcription	Liver	Liver
35	chr10:116268000-116277600	Weak transcription	A549	lung
36	chr10:116268000-116278800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:116268200-116272600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr10:116268200-116276200	Weak transcription	Brain Substantia Nigra	brain
39	chr10:116268200-116276600	Weak transcription	Fetal Stomach	stomach
40	chr10:116268200-116278800	Weak transcription	Fetal Intestine Large	intestine
41	chr10:116268200-116281600	Weak transcription	Brain Anterior Caudate	brain
42	chr10:116268400-116271000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:116268400-116271600	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:116268400-116271800	Weak transcription	HUVEC	blood vessel
45	chr10:116268400-116272200	Genic enhancers	Primary T cells fromperipheralblood	blood
46	chr10:116268400-116276800	Weak transcription	Fetal Intestine Small	intestine
47	chr10:116268400-116277000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr10:116268600-116269800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:116268600-116269800	Strong transcription	Primary B cells from cord blood	blood
50	chr10:116268600-116269800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood

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