Variant report

Variant	rs7091500
Chromosome Location	chr10:116269028-116269029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116103065..116105918-chr10:116267624..116269168,2	MCF-7	breast:
2	chr10:116265784..116270126-chr10:116277666..116281304,6	MCF-7	breast:
3	chr10:116265208..116269049-chr10:116284578..116287901,5	MCF-7	breast:
4	chr10:115932328..115934927-chr10:116267650..116269173,2	MCF-7	breast:
5	chr10:116265831..116269347-chr10:116277176..116281462,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000099204	Chromatin interaction
ENSG00000238742	Chromatin interaction
ENSG00000165813	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs34118174	1.00[AMR][1000 genomes]
rs34542287	1.00[AMR][1000 genomes]
rs7091419	0.83[YRI][hapmap]
rs7096046	1.00[AMR][1000 genomes]
rs73353743	1.00[AFR][1000 genomes]
rs7899481	1.00[AMR][1000 genomes]
rs7904189	1.00[AMR][1000 genomes]
rs7910687	1.00[AMR][1000 genomes]
rs7916756	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116225600-116278800	Weak transcription	HSMM	muscle
2	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
3	chr10:116258000-116271400	Enhancers	Stomach Mucosa	stomach
4	chr10:116259600-116272000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:116259800-116276800	Weak transcription	Thymus	Thymus
6	chr10:116260000-116269800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:116260000-116272800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr10:116260400-116272800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:116260800-116269600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr10:116261200-116279400	Weak transcription	GM12878-XiMat	blood
11	chr10:116262600-116274800	Weak transcription	Fetal Thymus	thymus
12	chr10:116264000-116271600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:116264400-116269400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:116264600-116269200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr10:116265000-116271800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr10:116265400-116271600	Weak transcription	Psoas Muscle	Psoas
17	chr10:116265400-116279400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr10:116265600-116274800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:116265600-116275200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:116266000-116275000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:116266000-116276600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:116266600-116269800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:116267000-116269800	Enhancers	Ovary	ovary
24	chr10:116267200-116269600	Genic enhancers	Left Ventricle	heart
25	chr10:116267400-116269600	Genic enhancers	Primary T cells from cord blood	blood
26	chr10:116267600-116274800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:116267600-116275000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:116267600-116278800	Weak transcription	Colonic Mucosa	Colon
29	chr10:116267600-116279200	Weak transcription	Aorta	Aorta
30	chr10:116267800-116269400	Strong transcription	Lung	lung
31	chr10:116267800-116271400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:116267800-116271600	Weak transcription	HMEC	breast
33	chr10:116267800-116271600	Weak transcription	NHEK	skin
34	chr10:116267800-116273200	Weak transcription	Pancreas	Pancrea
35	chr10:116267800-116274800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:116267800-116278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr10:116268000-116271600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:116268000-116272800	Weak transcription	Fetal Kidney	kidney
39	chr10:116268000-116273000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr10:116268000-116273400	Weak transcription	Liver	Liver
41	chr10:116268000-116277600	Weak transcription	A549	lung
42	chr10:116268000-116278800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr10:116268200-116269400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:116268200-116272600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr10:116268200-116276200	Weak transcription	Brain Substantia Nigra	brain
46	chr10:116268200-116276600	Weak transcription	Fetal Stomach	stomach
47	chr10:116268200-116278800	Weak transcription	Fetal Intestine Large	intestine
48	chr10:116268200-116281600	Weak transcription	Brain Anterior Caudate	brain
49	chr10:116268400-116269200	Weak transcription	Small Intestine	intestine
50	chr10:116268400-116271000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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