Variant report

Variant	rs7899481
Chromosome Location	chr10:116189457-116189458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116188336..116192373-chr10:116194440..116198221,4	K562	blood:
2	chr10:116185292..116187942-chr10:116188766..116190675,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34118174	1.00[AMR][1000 genomes]
rs34542287	1.00[AMR][1000 genomes]
rs7091500	1.00[AMR][1000 genomes]
rs7096046	1.00[AMR][1000 genomes]
rs7904189	1.00[AMR][1000 genomes]
rs7910687	1.00[AMR][1000 genomes]
rs7916756	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116180000-116196200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:116180800-116190200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:116181000-116190400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:116181400-116190600	Weak transcription	HMEC	breast
5	chr10:116185800-116189800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:116186000-116193600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:116186600-116193200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:116186600-116198200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:116186800-116194400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:116187000-116210400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:116187200-116189800	Weak transcription	Primary B cells from cord blood	blood
12	chr10:116187200-116192800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:116187200-116197800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:116187200-116203000	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:116187400-116191000	Weak transcription	Fetal Lung	lung
16	chr10:116187400-116192000	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:116187400-116192200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr10:116187400-116194200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:116187400-116194400	Weak transcription	Fetal Heart	heart
20	chr10:116187400-116196400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:116187400-116198400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:116187600-116190000	Weak transcription	Lung	lung
23	chr10:116187600-116193200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:116187600-116193800	Weak transcription	Brain Angular Gyrus	brain
25	chr10:116187600-116194400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr10:116187600-116194400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:116187600-116198000	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:116187600-116198400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:116187600-116198600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:116187600-116199000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:116187600-116204600	Weak transcription	Spleen	Spleen
32	chr10:116187800-116189800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:116187800-116189800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:116187800-116189800	Weak transcription	Adipose Nuclei	Adipose
35	chr10:116187800-116190200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:116187800-116190800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:116187800-116193400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr10:116187800-116193600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:116187800-116193800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr10:116187800-116196000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr10:116187800-116198000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:116187800-116198000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr10:116187800-116198000	Weak transcription	HSMM	muscle
44	chr10:116187800-116199800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:116187800-116207600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr10:116188000-116189600	Weak transcription	Esophagus	oesophagus
47	chr10:116188000-116190000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:116188000-116190200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:116188000-116191200	Weak transcription	HUVEC	blood vessel
50	chr10:116188000-116191800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links