Variant report

Variant	rs2485144
Chromosome Location	chr9:101204516-101204517
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1930409	1.00[AFR][1000 genomes]
rs2095120	1.00[AFR][1000 genomes]
rs2184024	1.00[AFR][1000 genomes]
rs2778919	1.00[AFR][1000 genomes]
rs2779564	1.00[AFR][1000 genomes]
rs2779569	1.00[AFR][1000 genomes]
rs2779576	1.00[AFR][1000 genomes]
rs2779578	1.00[AFR][1000 genomes]
rs2779581	1.00[AFR][1000 genomes]
rs2779582	1.00[AFR][1000 genomes]
rs2779587	1.00[AFR][1000 genomes]
rs2779588	1.00[AFR][1000 genomes]
rs2779604	1.00[AFR][1000 genomes]
rs2808560	1.00[AFR][1000 genomes]
rs2808568	1.00[AFR][1000 genomes]
rs2900383	1.00[AFR][1000 genomes]
rs500263	1.00[AFR][1000 genomes]
rs594920	1.00[AFR][1000 genomes]
rs612505	1.00[AFR][1000 genomes]
rs944760	1.00[AFR][1000 genomes]
rs944762	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101201000-101221200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101203600-101205000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:101204400-101204600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:101204400-101205200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:101204400-101205200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr9:101204400-101205200	Enhancers	K562	blood
7	chr9:101204400-101205600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:101204400-101205600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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