Variant report

Variant	rs2900383
Chromosome Location	chr9:101177706-101177707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1930409	1.00[AFR][1000 genomes]
rs2095120	1.00[AFR][1000 genomes]
rs2184024	1.00[AFR][1000 genomes]
rs2485144	1.00[AFR][1000 genomes]
rs2779564	1.00[AFR][1000 genomes]
rs2779569	1.00[AFR][1000 genomes]
rs2779576	1.00[AFR][1000 genomes]
rs2779578	1.00[AFR][1000 genomes]
rs2779581	1.00[AFR][1000 genomes]
rs2779582	1.00[AFR][1000 genomes]
rs2779587	1.00[AFR][1000 genomes]
rs2779588	1.00[AFR][1000 genomes]
rs2779604	1.00[AFR][1000 genomes]
rs2808560	1.00[AFR][1000 genomes]
rs2808568	1.00[AFR][1000 genomes]
rs500263	1.00[AFR][1000 genomes]
rs594920	1.00[AFR][1000 genomes]
rs612505	1.00[AFR][1000 genomes]
rs944760	1.00[AFR][1000 genomes]
rs944762	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101172400-101177800	Weak transcription	Right Atrium	heart
2	chr9:101173400-101177800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:101174800-101177800	Weak transcription	K562	blood
4	chr9:101175600-101178000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:101175600-101179200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr9:101175600-101179400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:101175600-101184400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:101175800-101177800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:101176000-101177800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:101176000-101179200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:101176200-101177800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:101176200-101178200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:101176200-101179200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:101177600-101179400	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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