Variant report

Variant	rs944760
Chromosome Location	chr9:101283741-101283742
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101281547..101284305-chr9:101287940..101290678,2	K562	blood:
2	chr9:101241642..101243980-chr9:101281362..101284210,2	MCF-7	breast:
3	chr9:101218366..101220871-chr9:101282476..101284374,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10986638	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16916777	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16916909	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1930409	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999503	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2095120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2184024	1.00[AFR][1000 genomes]
rs2485144	1.00[AFR][1000 genomes]
rs2778919	1.00[AFR][1000 genomes]
rs2779558	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2779564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2779569	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2779570	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2779576	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2779578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2779581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2779582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2779587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2779588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2779604	1.00[AFR][1000 genomes]
rs2808560	1.00[AFR][1000 genomes]
rs2808568	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900383	1.00[AFR][1000 genomes]
rs2900512	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4237192	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4743234	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4743237	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs500263	1.00[AFR][1000 genomes]
rs594920	1.00[AFR][1000 genomes]
rs612505	1.00[AFR][1000 genomes]
rs9408972	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs944762	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101282400-101283800	Enhancers	NH-A	brain
2	chr9:101282400-101284000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:101282400-101286000	Enhancers	HUVEC	blood vessel
4	chr9:101282600-101283800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:101282600-101284000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:101282600-101284200	Enhancers	Osteobl	bone
7	chr9:101282800-101284000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:101282800-101284000	Enhancers	NHDF-Ad	bronchial
9	chr9:101283000-101283800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:101283400-101283800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:101283400-101283800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:101283400-101283800	Enhancers	NHLF	lung
13	chr9:101283600-101283800	Enhancers	Fetal Brain Male	brain

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