Variant report

Variant	rs4743234
Chromosome Location	chr9:101313856-101313857
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101313147..101314853-chr9:101446937..101449701,2	MCF-7	breast:
2	chr9:101297663..101300259-chr9:101312178..101315523,3	MCF-7	breast:
3	chr9:101306147..101307705-chr9:101312310..101313945,2	K562	blood:
4	chr9:101305246..101310158-chr9:101310437..101314302,6	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10986631	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10986638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10986647	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16916777	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16916909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1930409	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1999502	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1999503	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2001992	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2779558	1.00[JPT][hapmap]
rs2779569	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2779576	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2808568	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2900512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4237192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4578071	0.84[AMR][1000 genomes]
rs4743237	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs62576023	0.94[ASN][1000 genomes]
rs62576024	0.91[ASN][1000 genomes]
rs9408972	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs944760	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs944762	0.85[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv6633	chr9:101308371-101342811	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv1841097	chr9:101309058-101317401	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101311800-101315400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:101311800-101316600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr9:101312000-101314000	Enhancers	NH-A	brain
4	chr9:101313800-101314000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:101313800-101315000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr9:101313800-101315200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:101313800-101315600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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