Variant report
Variant | rs9408972 |
---|---|
Chromosome Location | chr9:101296610-101296611 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10986638 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs16916777 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs16916909 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs1930409 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs1999503 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2779558 | 1.00[JPT][hapmap] |
rs2779569 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2779576 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2808568 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2900512 | 1.00[JPT][hapmap] |
rs4237192 | 0.89[CEU][hapmap];1.00[JPT][hapmap] |
rs4743234 | 0.89[CEU][hapmap];1.00[JPT][hapmap] |
rs4743237 | 1.00[JPT][hapmap] |
rs944760 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs944762 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv430085 | chr9:100928245-101339645 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
2 | nsv831665 | chr9:101170061-101367692 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv614936 | chr9:101182698-101680380 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
4 | esv2363946 | chr9:101296608-101296615 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:101295800-101302400 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |