Variant report

Variant	rs10986638
Chromosome Location	chr9:101300999-101301000
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101299953..101302542-chr9:101304588..101306408,2	MCF-7	breast:
2	chr9:101299271..101301667-chr9:101338837..101340392,2	K562	blood:
3	chr9:101287762..101289415-chr9:101300706..101302860,2	MCF-7	breast:
4	chr9:101085806..101088798-chr9:101299467..101301907,2	K562	blood:
5	chr9:101289571..101291142-chr9:101298750..101301335,2	MCF-7	breast:
6	chr9:101299271..101301667-chr9:101337851..101340392,3	K562	blood:
7	chr9:101295391..101297834-chr9:101299775..101301545,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10986631	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986647	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16916777	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16916909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1930409	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1999502	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999503	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2001992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2779558	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2779569	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2779576	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2808568	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2900512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4237192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4578071	0.86[AMR][1000 genomes]
rs4743234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743237	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs62576023	0.92[ASN][1000 genomes]
rs62576024	0.86[ASN][1000 genomes]
rs9408972	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs944760	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs944762	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101295800-101302400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:101298400-101304400	Weak transcription	Right Atrium	heart
3	chr9:101299400-101303000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr9:101300400-101302400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:101300600-101301400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:101300600-101301800	Enhancers	Fetal Brain Male	brain
7	chr9:101300800-101301400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:101300800-101301600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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