Variant report
| Variant | rs16916777 |
|---|---|
| Chromosome Location | chr9:101281175-101281176 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10986638 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16916909 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1930409 | 1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs1999503 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2095120 | 0.95[ASN][1000 genomes] |
| rs2184024 | 0.83[CHD][hapmap] |
| rs2779558 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs2779564 | 0.98[ASN][1000 genomes] |
| rs2779569 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2779570 | 1.00[ASN][1000 genomes] |
| rs2779576 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2779578 | 0.95[ASN][1000 genomes] |
| rs2779581 | 0.95[ASN][1000 genomes] |
| rs2779582 | 0.95[ASN][1000 genomes] |
| rs2779587 | 0.95[ASN][1000 genomes] |
| rs2779588 | 0.95[ASN][1000 genomes] |
| rs2808568 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2900512 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs4237192 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs4743234 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs4743237 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs7047515 | 0.87[CEU][hapmap] |
| rs9408972 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs944760 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs944762 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430085 | chr9:100928245-101339645 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv831665 | chr9:101170061-101367692 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv614936 | chr9:101182698-101680380 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs16916777 | DMRT2 | trans | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:101275800-101282800 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr9:101281000-101281200 | Enhancers | Brain Dorsolateral Prefrontal Cortex | brain |
