Variant report

Variant	rs500263
Chromosome Location	chr9:101103018-101103019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1930409	1.00[AFR][1000 genomes]
rs2095120	1.00[AFR][1000 genomes]
rs2184024	1.00[AFR][1000 genomes]
rs2485144	1.00[AFR][1000 genomes]
rs2779564	1.00[AFR][1000 genomes]
rs2779569	1.00[AFR][1000 genomes]
rs2779576	1.00[AFR][1000 genomes]
rs2779578	1.00[AFR][1000 genomes]
rs2779581	1.00[AFR][1000 genomes]
rs2779582	1.00[AFR][1000 genomes]
rs2779587	1.00[AFR][1000 genomes]
rs2779588	1.00[AFR][1000 genomes]
rs2808560	1.00[AFR][1000 genomes]
rs2808568	1.00[AFR][1000 genomes]
rs2900383	1.00[AFR][1000 genomes]
rs594920	1.00[AFR][1000 genomes]
rs612505	1.00[AFR][1000 genomes]
rs944760	1.00[AFR][1000 genomes]
rs944762	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101094400-101104400	Weak transcription	Brain Angular Gyrus	brain
2	chr9:101097600-101119600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:101102200-101103600	Enhancers	Lung	lung
4	chr9:101102800-101103200	Enhancers	K562	blood
5	chr9:101102800-101103400	Enhancers	Spleen	Spleen
6	chr9:101102800-101103600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:101102800-101105400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:101103000-101105200	Enhancers	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links