Variant report

Variant rs2489126
Chromosome Location chr1:145009737-145009738
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:145000400-145010200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:145000800-145021600 Weak transcription Breast Myoepithelial Primary Cells Breast
3 chr1:145002800-145012000 Weak transcription Pancreas Pancrea
4 chr1:145002800-145024200 Weak transcription Gastric stomach
5 chr1:145004000-145014800 Strong transcription Placenta Placenta
6 chr1:145004600-145016200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr1:145005000-145010200 Weak transcription Lung lung
8 chr1:145005400-145014800 Weak transcription Fetal Intestine Small intestine
9 chr1:145006200-145012200 Weak transcription Fetal Brain Female brain
10 chr1:145006400-145009800 Weak transcription Right Ventricle heart
11 chr1:145006400-145014800 Weak transcription HUES6 Cell Line embryonic stem cell
12 chr1:145006600-145010600 Weak transcription Brain Angular Gyrus brain
13 chr1:145006600-145014400 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr1:145006600-145016400 Weak transcription iPS-18 Cell Line embryonic stem cell
15 chr1:145007800-145009800 Genic enhancers Brain Cingulate Gyrus brain
16 chr1:145007800-145010000 Genic enhancers Brain Inferior Temporal Lobe brain
17 chr1:145008000-145013800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr1:145008000-145014800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr1:145008200-145010600 Weak transcription Fetal Brain Male brain
20 chr1:145008200-145010800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:145008200-145016800 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr1:145008400-145010400 Enhancers HMEC breast
23 chr1:145008400-145011400 Weak transcription Pancreatic Islets Pancreatic Islet
24 chr1:145008600-145010000 Flanking Active TSS Muscle Satellite Cultured Cells --
25 chr1:145008600-145010000 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
26 chr1:145008600-145010000 Enhancers Fetal Stomach stomach
27 chr1:145008600-145010400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
28 chr1:145008600-145010600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:145008600-145010600 Enhancers Placenta Amnion Placenta Amnion
30 chr1:145008600-145010800 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr1:145008600-145010800 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:145008600-145011000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr1:145008600-145012200 Weak transcription Fetal Heart heart
34 chr1:145008800-145009800 Enhancers Fetal Lung lung
35 chr1:145008800-145010000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:145008800-145010200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr1:145008800-145010200 Weak transcription Fetal Muscle Trunk muscle
38 chr1:145008800-145010200 Flanking Active TSS K562 blood
39 chr1:145008800-145010200 Flanking Active TSS NHDF-Ad bronchial
40 chr1:145009000-145009800 Enhancers Cortex derived primary cultured neurospheres brain
41 chr1:145009000-145009800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
42 chr1:145009000-145010000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr1:145009000-145010000 Flanking Active TSS Primary monocytes fromperipheralblood blood
44 chr1:145009000-145010000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr1:145009000-145010000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
46 chr1:145009000-145010000 Flanking Active TSS Duodenum Smooth Muscle Duodenum
47 chr1:145009000-145010000 Active TSS Rectal Mucosa Donor 29 rectum
48 chr1:145009000-145010000 Transcr. at gene 5' and 3' HSMM muscle
49 chr1:145009000-145010000 Flanking Active TSS NH-A brain
50 chr1:145009000-145010000 Flanking Active TSS NHLF lung

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