Variant report

Variant	rs2492562
Chromosome Location	chr13:69475321-69475322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:69468479..69470579-chr13:69472768..69475321,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1370947	1.00[EUR][1000 genomes]
rs1470015	1.00[EUR][1000 genomes]
rs1470016	1.00[EUR][1000 genomes]
rs1821900	1.00[EUR][1000 genomes]
rs1837246	1.00[EUR][1000 genomes]
rs2164971	1.00[EUR][1000 genomes]
rs2438438	1.00[EUR][1000 genomes]
rs2438439	1.00[EUR][1000 genomes]
rs2438440	1.00[EUR][1000 genomes]
rs2438443	1.00[EUR][1000 genomes]
rs2438453	1.00[EUR][1000 genomes]
rs2438454	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2438457	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2492546	0.97[EUR][1000 genomes]
rs2492548	1.00[EUR][1000 genomes]
rs2492554	1.00[EUR][1000 genomes]
rs2492555	1.00[EUR][1000 genomes]
rs2492556	1.00[EUR][1000 genomes]
rs2492560	1.00[EUR][1000 genomes]
rs2492563	1.00[EUR][1000 genomes]
rs2492566	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2492567	1.00[EUR][1000 genomes]
rs59987685	0.84[AFR][1000 genomes]
rs73209749	0.88[EUR][1000 genomes]
rs73209751	0.88[EUR][1000 genomes]
rs9529460	0.85[EUR][1000 genomes]
rs9541634	0.88[EUR][1000 genomes]
rs9541679	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1046227	chr13:69402973-69543492	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv471146	chr13:69444490-69484933	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv455958	chr13:69448114-69481733	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv562199	chr13:69448114-69481733	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv900453	chr13:69449431-69757982	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv983633	chr13:69474506-69481633	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69472000-69478800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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