Variant report
Variant | rs1470015 |
---|---|
Chromosome Location | chr13:69468998-69468999 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr13:69468479..69470579-chr13:69472768..69475321,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1370947 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1470016 | 1.00[EUR][1000 genomes] |
rs1583677 | 0.92[AMR][1000 genomes] |
rs1821900 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1837246 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1837247 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs2164971 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2438438 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2438439 | 1.00[EUR][1000 genomes] |
rs2438440 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2438443 | 1.00[EUR][1000 genomes] |
rs2438453 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2438454 | 1.00[EUR][1000 genomes] |
rs2438457 | 1.00[EUR][1000 genomes] |
rs2492546 | 0.97[EUR][1000 genomes] |
rs2492548 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2492554 | 1.00[EUR][1000 genomes] |
rs2492555 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2492556 | 1.00[EUR][1000 genomes] |
rs2492560 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2492562 | 1.00[EUR][1000 genomes] |
rs2492563 | 1.00[EUR][1000 genomes] |
rs2492566 | 1.00[EUR][1000 genomes] |
rs2492567 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2492573 | 0.92[AMR][1000 genomes] |
rs2492575 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs2492578 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs2492579 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs602114 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs604741 | 1.00[AFR][1000 genomes] |
rs605584 | 0.92[AMR][1000 genomes] |
rs623332 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs634525 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs635842 | 0.85[AMR][1000 genomes] |
rs73206176 | 1.00[AFR][1000 genomes] |
rs73206182 | 1.00[AFR][1000 genomes] |
rs73206183 | 1.00[AFR][1000 genomes] |
rs73206188 | 1.00[AFR][1000 genomes] |
rs73206191 | 1.00[AFR][1000 genomes] |
rs73206192 | 1.00[AFR][1000 genomes] |
rs73206193 | 1.00[AFR][1000 genomes] |
rs73206194 | 1.00[AFR][1000 genomes] |
rs73206198 | 1.00[AFR][1000 genomes] |
rs73206199 | 1.00[AFR][1000 genomes] |
rs73206200 | 1.00[AFR][1000 genomes] |
rs73206201 | 1.00[AFR][1000 genomes] |
rs73207803 | 1.00[AFR][1000 genomes] |
rs73207804 | 1.00[AFR][1000 genomes] |
rs73207805 | 1.00[AFR][1000 genomes] |
rs73207807 | 1.00[AFR][1000 genomes] |
rs73209749 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs73209751 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs73211724 | 1.00[AFR][1000 genomes] |
rs73211744 | 1.00[AFR][1000 genomes] |
rs9317720 | 1.00[AFR][1000 genomes] |
rs9317721 | 1.00[AFR][1000 genomes] |
rs9317722 | 1.00[AFR][1000 genomes] |
rs9529411 | 1.00[AFR][1000 genomes] |
rs9529412 | 1.00[AFR][1000 genomes] |
rs9529413 | 1.00[AFR][1000 genomes] |
rs9529419 | 1.00[AFR][1000 genomes] |
rs9529420 | 1.00[AFR][1000 genomes] |
rs9529421 | 1.00[AFR][1000 genomes] |
rs9529422 | 1.00[AFR][1000 genomes] |
rs9529423 | 1.00[AFR][1000 genomes] |
rs9529460 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs9541507 | 1.00[AFR][1000 genomes] |
rs9541508 | 1.00[AFR][1000 genomes] |
rs9541509 | 1.00[AFR][1000 genomes] |
rs9541510 | 1.00[AFR][1000 genomes] |
rs9541511 | 1.00[AFR][1000 genomes] |
rs9541522 | 1.00[AFR][1000 genomes] |
rs9541525 | 1.00[AFR][1000 genomes] |
rs9541526 | 1.00[AFR][1000 genomes] |
rs9541634 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs9541679 | 0.85[CEU][hapmap];1.00[AFR][1000 genomes] |
rs9541680 | 1.00[AFR][1000 genomes] |
rs9541692 | 1.00[AFR][1000 genomes] |
rs9541740 | 1.00[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1049303 | chr13:69238676-69923558 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
2 | nsv1038918 | chr13:69251052-69919763 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | nsv541829 | chr13:69251052-69919763 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | nsv1046227 | chr13:69402973-69543492 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
5 | nsv471146 | chr13:69444490-69484933 | Enhancers Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
6 | nsv455958 | chr13:69448114-69481733 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
7 | nsv562199 | chr13:69448114-69481733 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
8 | nsv900453 | chr13:69449431-69757982 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:69463200-69472600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr13:69465800-69471400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
3 | chr13:69467000-69471800 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
4 | chr13:69467200-69471200 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
5 | chr13:69467200-69471400 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
6 | chr13:69467400-69471600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
7 | chr13:69467800-69471600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
8 | chr13:69468600-69469000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |