Variant report

Variant	rs635842
Chromosome Location	chr13:69432492-69432493
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1370947	0.85[AMR][1000 genomes]
rs1470015	0.85[AMR][1000 genomes]
rs1583677	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1837246	0.85[AMR][1000 genomes]
rs1837247	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2438438	0.85[AMR][1000 genomes]
rs2438440	0.85[AMR][1000 genomes]
rs2438453	0.85[AMR][1000 genomes]
rs2492548	0.85[AMR][1000 genomes]
rs2492560	0.85[AMR][1000 genomes]
rs2492573	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2492575	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2492578	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2492579	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs602114	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs605584	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs623332	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs634525	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73209749	0.85[AMR][1000 genomes]
rs73209751	0.85[AMR][1000 genomes]
rs9529460	0.85[AMR][1000 genomes]
rs9541634	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1046227	chr13:69402973-69543492	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv562198	chr13:69424751-69456954	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69420600-69448400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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