Variant report
Variant | rs73209749 |
---|---|
Chromosome Location | chr13:69503852-69503853 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1370947 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1470015 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1470016 | 0.88[EUR][1000 genomes] |
rs1583677 | 0.92[AMR][1000 genomes] |
rs1821900 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1837246 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1837247 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs2164971 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2438438 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2438439 | 0.88[EUR][1000 genomes] |
rs2438440 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2438443 | 0.88[EUR][1000 genomes] |
rs2438453 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2438454 | 0.88[EUR][1000 genomes] |
rs2438457 | 0.88[EUR][1000 genomes] |
rs2492546 | 0.85[EUR][1000 genomes] |
rs2492548 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2492554 | 0.88[EUR][1000 genomes] |
rs2492555 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2492556 | 0.88[EUR][1000 genomes] |
rs2492560 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2492562 | 0.88[EUR][1000 genomes] |
rs2492563 | 0.88[EUR][1000 genomes] |
rs2492566 | 0.88[EUR][1000 genomes] |
rs2492567 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2492573 | 0.92[AMR][1000 genomes] |
rs2492575 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs2492578 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs2492579 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs602114 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs604741 | 1.00[AFR][1000 genomes] |
rs605584 | 0.92[AMR][1000 genomes] |
rs623332 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs634525 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes] |
rs635842 | 0.85[AMR][1000 genomes] |
rs73207807 | 1.00[AFR][1000 genomes] |
rs73209751 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73211724 | 1.00[AFR][1000 genomes] |
rs73211744 | 1.00[AFR][1000 genomes] |
rs9529422 | 1.00[AFR][1000 genomes] |
rs9529423 | 1.00[AFR][1000 genomes] |
rs9529460 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs9529503 | 1.00[AFR][1000 genomes] |
rs9541634 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9541679 | 1.00[AFR][1000 genomes] |
rs9541680 | 1.00[AFR][1000 genomes] |
rs9541692 | 1.00[AFR][1000 genomes] |
rs9541740 | 1.00[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1049303 | chr13:69238676-69923558 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
2 | nsv1038918 | chr13:69251052-69919763 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | nsv541829 | chr13:69251052-69919763 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | nsv1046227 | chr13:69402973-69543492 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
5 | nsv900453 | chr13:69449431-69757982 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv900454 | chr13:69484933-69560429 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv900455 | chr13:69484933-69579427 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv900456 | chr13:69484933-69586193 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv900457 | chr13:69484933-69593473 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
10 | nsv900458 | chr13:69484933-69615359 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
11 | nsv900459 | chr13:69484933-69741897 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
12 | esv1826146 | chr13:69494334-69530750 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
13 | nsv1038347 | chr13:69494334-69745622 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
14 | nsv471147 | chr13:69500672-69559370 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:69503600-69504200 | Enhancers | Breast Myoepithelial Primary Cells | Breast |