Variant report

Variant	rs604741
Chromosome Location	chr13:69387266-69387267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:69385279..69388108-chr13:69393931..69396561,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1370947	1.00[AFR][1000 genomes]
rs1470015	1.00[AFR][1000 genomes]
rs1583677	0.86[AMR][1000 genomes]
rs1837247	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2438438	1.00[AFR][1000 genomes]
rs2438440	1.00[AFR][1000 genomes]
rs2438453	1.00[AFR][1000 genomes]
rs2492555	1.00[AFR][1000 genomes]
rs2492560	1.00[AFR][1000 genomes]
rs2492573	0.86[AMR][1000 genomes]
rs2492575	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2492578	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2492579	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs287377	0.88[CEU][hapmap];1.00[GIH][hapmap]
rs287408	0.88[CEU][hapmap]
rs4884795	0.88[CEU][hapmap]
rs602114	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs605584	0.86[AMR][1000 genomes]
rs623332	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs634525	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73206165	1.00[AFR][1000 genomes]
rs73206166	1.00[AFR][1000 genomes]
rs73206168	1.00[AFR][1000 genomes]
rs73206170	1.00[AFR][1000 genomes]
rs73206171	1.00[AFR][1000 genomes]
rs73206176	1.00[AFR][1000 genomes]
rs73206182	1.00[AFR][1000 genomes]
rs73206183	1.00[AFR][1000 genomes]
rs73206188	1.00[AFR][1000 genomes]
rs73206191	1.00[AFR][1000 genomes]
rs73206192	1.00[AFR][1000 genomes]
rs73206193	1.00[AFR][1000 genomes]
rs73206194	1.00[AFR][1000 genomes]
rs73206198	1.00[AFR][1000 genomes]
rs73206199	1.00[AFR][1000 genomes]
rs73206200	1.00[AFR][1000 genomes]
rs73206201	1.00[AFR][1000 genomes]
rs73207803	1.00[AFR][1000 genomes]
rs73207804	1.00[AFR][1000 genomes]
rs73207805	1.00[AFR][1000 genomes]
rs73207807	1.00[AFR][1000 genomes]
rs73209749	1.00[AFR][1000 genomes]
rs73209751	1.00[AFR][1000 genomes]
rs73211724	1.00[AFR][1000 genomes]
rs73211744	1.00[AFR][1000 genomes]
rs9317720	1.00[AFR][1000 genomes]
rs9317721	1.00[AFR][1000 genomes]
rs9317722	1.00[AFR][1000 genomes]
rs9529399	0.85[CEU][hapmap]
rs9529406	1.00[AFR][1000 genomes]
rs9529407	1.00[AFR][1000 genomes]
rs9529411	1.00[AFR][1000 genomes]
rs9529412	1.00[AFR][1000 genomes]
rs9529413	1.00[AFR][1000 genomes]
rs9529419	1.00[AFR][1000 genomes]
rs9529420	1.00[AFR][1000 genomes]
rs9529421	1.00[AFR][1000 genomes]
rs9529422	1.00[AFR][1000 genomes]
rs9529423	1.00[AFR][1000 genomes]
rs9529460	1.00[AFR][1000 genomes]
rs9541483	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs9541496	1.00[AFR][1000 genomes]
rs9541497	1.00[AFR][1000 genomes]
rs9541498	1.00[AFR][1000 genomes]
rs9541500	1.00[AFR][1000 genomes]
rs9541501	1.00[AFR][1000 genomes]
rs9541503	1.00[AFR][1000 genomes]
rs9541504	1.00[AFR][1000 genomes]
rs9541505	1.00[AFR][1000 genomes]
rs9541506	1.00[AFR][1000 genomes]
rs9541507	1.00[AFR][1000 genomes]
rs9541508	1.00[AFR][1000 genomes]
rs9541509	1.00[AFR][1000 genomes]
rs9541510	1.00[AFR][1000 genomes]
rs9541511	1.00[AFR][1000 genomes]
rs9541522	1.00[AFR][1000 genomes]
rs9541525	1.00[AFR][1000 genomes]
rs9541526	1.00[AFR][1000 genomes]
rs9541634	1.00[AFR][1000 genomes]
rs9541679	1.00[AFR][1000 genomes]
rs9541680	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900442	chr13:69223307-69387266	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv900451	chr13:69290386-69387266	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2757540	chr13:69355636-69392579	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2759945	chr13:69355636-69392579	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900452	chr13:69359391-69387266	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv471145	chr13:69375632-69388776	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv976245	chr13:69383145-69387869	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3518742	chr13:69385694-69393561	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3518753	chr13:69385694-69393561	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv826691	chr13:69385796-69392970	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69387000-69387800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr13:69387000-69388200	Enhancers	Fetal Heart	heart
3	chr13:69387200-69387600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:69387200-69387800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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