Variant report

Variant	rs2492555
Chromosome Location	chr13:69466922-69466923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1370947	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1470015	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1470016	1.00[EUR][1000 genomes]
rs1821900	1.00[EUR][1000 genomes]
rs1837246	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1837247	1.00[AFR][1000 genomes]
rs2164971	1.00[EUR][1000 genomes]
rs2438438	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2438439	1.00[EUR][1000 genomes]
rs2438440	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2438443	1.00[EUR][1000 genomes]
rs2438453	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2438454	1.00[EUR][1000 genomes]
rs2438457	1.00[EUR][1000 genomes]
rs2492546	0.97[EUR][1000 genomes]
rs2492548	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2492554	1.00[EUR][1000 genomes]
rs2492556	1.00[EUR][1000 genomes]
rs2492560	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2492562	1.00[EUR][1000 genomes]
rs2492563	1.00[EUR][1000 genomes]
rs2492566	1.00[EUR][1000 genomes]
rs2492567	1.00[EUR][1000 genomes]
rs2492575	1.00[AFR][1000 genomes]
rs2492578	1.00[AFR][1000 genomes]
rs2492579	1.00[AFR][1000 genomes]
rs602114	1.00[AFR][1000 genomes]
rs604741	1.00[AFR][1000 genomes]
rs623332	1.00[AFR][1000 genomes]
rs634525	1.00[AFR][1000 genomes]
rs73206176	1.00[AFR][1000 genomes]
rs73206182	1.00[AFR][1000 genomes]
rs73206183	1.00[AFR][1000 genomes]
rs73206188	1.00[AFR][1000 genomes]
rs73206191	1.00[AFR][1000 genomes]
rs73206192	1.00[AFR][1000 genomes]
rs73206193	1.00[AFR][1000 genomes]
rs73206194	1.00[AFR][1000 genomes]
rs73206198	1.00[AFR][1000 genomes]
rs73206199	1.00[AFR][1000 genomes]
rs73206200	1.00[AFR][1000 genomes]
rs73206201	1.00[AFR][1000 genomes]
rs73207803	1.00[AFR][1000 genomes]
rs73207804	1.00[AFR][1000 genomes]
rs73207805	1.00[AFR][1000 genomes]
rs73207807	1.00[AFR][1000 genomes]
rs73209749	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73209751	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73211724	1.00[AFR][1000 genomes]
rs73211744	1.00[AFR][1000 genomes]
rs9317720	1.00[AFR][1000 genomes]
rs9317721	1.00[AFR][1000 genomes]
rs9317722	1.00[AFR][1000 genomes]
rs9529411	1.00[AFR][1000 genomes]
rs9529412	1.00[AFR][1000 genomes]
rs9529413	1.00[AFR][1000 genomes]
rs9529419	1.00[AFR][1000 genomes]
rs9529420	1.00[AFR][1000 genomes]
rs9529421	1.00[AFR][1000 genomes]
rs9529422	1.00[AFR][1000 genomes]
rs9529423	1.00[AFR][1000 genomes]
rs9529460	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9541504	1.00[AFR][1000 genomes]
rs9541505	1.00[AFR][1000 genomes]
rs9541506	1.00[AFR][1000 genomes]
rs9541507	1.00[AFR][1000 genomes]
rs9541508	1.00[AFR][1000 genomes]
rs9541509	1.00[AFR][1000 genomes]
rs9541510	1.00[AFR][1000 genomes]
rs9541511	1.00[AFR][1000 genomes]
rs9541522	1.00[AFR][1000 genomes]
rs9541525	1.00[AFR][1000 genomes]
rs9541526	1.00[AFR][1000 genomes]
rs9541634	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9541679	1.00[AFR][1000 genomes]
rs9541680	1.00[AFR][1000 genomes]
rs9541692	1.00[AFR][1000 genomes]
rs9541740	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1046227	chr13:69402973-69543492	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv471146	chr13:69444490-69484933	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv455958	chr13:69448114-69481733	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv562199	chr13:69448114-69481733	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv900453	chr13:69449431-69757982	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69463200-69472600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:69464000-69467400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:69465800-69471400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:69466600-69467000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:69466600-69467400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr13:69466800-69467000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:69466800-69467600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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