Variant report

Variant	rs602114
Chromosome Location	chr13:69420941-69420942
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1370947	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1470015	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1583677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1837246	0.92[AMR][1000 genomes]
rs1837247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2438438	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2438440	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2438453	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2492548	0.92[AMR][1000 genomes]
rs2492555	1.00[AFR][1000 genomes]
rs2492560	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2492573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2492575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2492578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2492579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs604741	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs605584	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs623332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs634525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs635842	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206165	1.00[AFR][1000 genomes]
rs73206166	1.00[AFR][1000 genomes]
rs73206168	1.00[AFR][1000 genomes]
rs73206170	1.00[AFR][1000 genomes]
rs73206171	1.00[AFR][1000 genomes]
rs73206176	1.00[AFR][1000 genomes]
rs73206182	1.00[AFR][1000 genomes]
rs73206183	1.00[AFR][1000 genomes]
rs73206188	1.00[AFR][1000 genomes]
rs73206191	1.00[AFR][1000 genomes]
rs73206192	1.00[AFR][1000 genomes]
rs73206193	1.00[AFR][1000 genomes]
rs73206194	1.00[AFR][1000 genomes]
rs73206198	1.00[AFR][1000 genomes]
rs73206199	1.00[AFR][1000 genomes]
rs73206200	1.00[AFR][1000 genomes]
rs73206201	1.00[AFR][1000 genomes]
rs73207803	1.00[AFR][1000 genomes]
rs73207804	1.00[AFR][1000 genomes]
rs73207805	1.00[AFR][1000 genomes]
rs73207807	1.00[AFR][1000 genomes]
rs73209749	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73209751	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73211724	1.00[AFR][1000 genomes]
rs73211744	1.00[AFR][1000 genomes]
rs9317720	1.00[AFR][1000 genomes]
rs9317721	1.00[AFR][1000 genomes]
rs9317722	1.00[AFR][1000 genomes]
rs9529406	1.00[AFR][1000 genomes]
rs9529407	1.00[AFR][1000 genomes]
rs9529411	1.00[AFR][1000 genomes]
rs9529412	1.00[AFR][1000 genomes]
rs9529413	1.00[AFR][1000 genomes]
rs9529419	1.00[AFR][1000 genomes]
rs9529420	1.00[AFR][1000 genomes]
rs9529421	1.00[AFR][1000 genomes]
rs9529422	1.00[AFR][1000 genomes]
rs9529423	1.00[AFR][1000 genomes]
rs9529460	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9541483	1.00[AFR][1000 genomes]
rs9541496	1.00[AFR][1000 genomes]
rs9541497	1.00[AFR][1000 genomes]
rs9541498	1.00[AFR][1000 genomes]
rs9541500	1.00[AFR][1000 genomes]
rs9541501	1.00[AFR][1000 genomes]
rs9541503	1.00[AFR][1000 genomes]
rs9541504	1.00[AFR][1000 genomes]
rs9541505	1.00[AFR][1000 genomes]
rs9541506	1.00[AFR][1000 genomes]
rs9541507	1.00[AFR][1000 genomes]
rs9541508	1.00[AFR][1000 genomes]
rs9541509	1.00[AFR][1000 genomes]
rs9541510	1.00[AFR][1000 genomes]
rs9541511	1.00[AFR][1000 genomes]
rs9541522	1.00[AFR][1000 genomes]
rs9541525	1.00[AFR][1000 genomes]
rs9541526	1.00[AFR][1000 genomes]
rs9541634	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9541679	1.00[AFR][1000 genomes]
rs9541680	1.00[AFR][1000 genomes]
rs9541692	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1046227	chr13:69402973-69543492	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv976228	chr13:69411354-69424225	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69420600-69448400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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