Variant report

Variant	rs2504878
Chromosome Location	chr6:12538455-12538456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11970522	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2490444	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2490445	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2490452	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2504853	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2504857	0.81[AFR][1000 genomes]
rs2504873	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504881	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504885	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12536600-12540200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:12537000-12539600	Enhancers	NH-A	brain
3	chr6:12537200-12538800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:12537400-12539600	Enhancers	Osteobl	bone
5	chr6:12537400-12540000	Enhancers	Fetal Intestine Small	intestine
6	chr6:12537600-12540400	Enhancers	HUVEC	blood vessel
7	chr6:12537800-12538800	Enhancers	HepG2	liver
8	chr6:12537800-12540200	Enhancers	Fetal Intestine Large	intestine
9	chr6:12537800-12545200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:12538000-12538600	Weak transcription	Stomach Mucosa	stomach
11	chr6:12538000-12539000	Weak transcription	Ovary	ovary
12	chr6:12538000-12540000	Enhancers	Placenta	Placenta
13	chr6:12538000-12540200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:12538000-12546200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:12538200-12539200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:12538400-12538800	Enhancers	Liver	Liver
17	chr6:12538400-12539400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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