Variant report

Variant	rs2490444
Chromosome Location	chr6:12544169-12544170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11970522	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2490445	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2490452	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2504853	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2504873	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2504878	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2504881	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2504885	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2504888	0.82[ASN][1000 genomes]
rs2504892	0.80[ASN][1000 genomes]
rs6927894	0.82[ASN][1000 genomes]
rs9472034	0.82[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12537800-12545200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:12538000-12546200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:12539400-12544600	Weak transcription	Aorta	Aorta
4	chr6:12539600-12545200	Weak transcription	Osteobl	bone
5	chr6:12543800-12545000	ZNF genes & repeats	GM12878-XiMat	blood
6	chr6:12543800-12545400	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:12543800-12545600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:12543800-12546800	Enhancers	Fetal Intestine Small	intestine
9	chr6:12543800-12547200	Enhancers	Fetal Intestine Large	intestine
10	chr6:12544000-12544800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr6:12544000-12545200	Weak transcription	NH-A	brain
12	chr6:12544000-12545800	Weak transcription	A549	lung
13	chr6:12544000-12546200	Enhancers	Stomach Mucosa	stomach
14	chr6:12544000-12547200	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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