Variant report

Variant	rs2504853
Chromosome Location	chr6:12535111-12535112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11970522	0.97[EUR][1000 genomes]
rs2490444	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2490445	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2490452	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2504873	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2504878	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2504881	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2504885	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2504888	0.81[ASN][1000 genomes]
rs6927894	0.81[ASN][1000 genomes]
rs9472034	0.81[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12530800-12537200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:12531000-12537000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:12531000-12538400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:12533600-12536800	Enhancers	HUVEC	blood vessel
5	chr6:12534200-12535400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr6:12534400-12535400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:12535000-12536600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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