Variant report

Variant	rs2504888
Chromosome Location	chr6:12556774-12556775
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12549413..12551737-chr6:12554854..12557168,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10948081	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11970539	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11970595	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17698983	0.80[EUR][1000 genomes]
rs17766596	0.81[EUR][1000 genomes]
rs2327566	0.81[EUR][1000 genomes]
rs2327567	0.81[EUR][1000 genomes]
rs2490444	0.82[ASN][1000 genomes]
rs2490447	0.83[AMR][1000 genomes]
rs2490449	0.81[AMR][1000 genomes]
rs2504853	0.81[ASN][1000 genomes]
rs2504892	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2504895	0.84[AMR][1000 genomes]
rs2504897	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2876277	0.84[AMR][1000 genomes]
rs4526191	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4535543	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4623230	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6911432	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6927894	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937502	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7751296	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7765505	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7770994	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9357416	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9394959	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9472034	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9472108	0.84[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12555800-12569800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:12556000-12557000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:12556200-12557400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:12556200-12557800	Weak transcription	Osteobl	bone
5	chr6:12556400-12557200	Enhancers	Small Intestine	intestine

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