Variant report

Variant	rs6937502
Chromosome Location	chr6:12549099-12549100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17698884	0.88[ASN][1000 genomes]
rs17698983	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17766596	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327566	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327567	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504857	0.88[ASN][1000 genomes]
rs2504888	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55655151	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55758472	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56285024	0.86[EUR][1000 genomes]
rs56388817	0.88[ASN][1000 genomes]
rs58288781	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59222149	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67172952	0.86[EUR][1000 genomes]
rs6911027	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6911432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833774	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6937502	NOL7	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12544600-12549400	Enhancers	HSMMtube	muscle
2	chr6:12547000-12555600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:12547200-12555600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:12547600-12549200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:12547800-12549600	Enhancers	HSMM	muscle
6	chr6:12548600-12549400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:12548600-12549400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:12548600-12549400	Enhancers	NH-A	brain
9	chr6:12548600-12549400	Enhancers	Osteobl	bone
10	chr6:12548600-12550000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:12548800-12549400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:12549000-12549200	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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