Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11970539	0.80[AMR][1000 genomes]
rs17698983	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17766596	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2327566	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2327567	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55655151	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55758472	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55779406	0.83[ASN][1000 genomes]
rs56285024	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58288781	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59222149	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6911027	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6911432	0.86[EUR][1000 genomes]
rs6937502	0.86[EUR][1000 genomes]
rs72833774	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7745473	0.84[ASN][1000 genomes]
rs7770994	0.80[AMR][1000 genomes]
rs9296411	0.84[ASN][1000 genomes]
rs9296412	0.84[ASN][1000 genomes]
rs9918358	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470801	chr6:12559239-12666093	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12555800-12569800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:12560600-12561000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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