Variant report

Variant	rs72833774
Chromosome Location	chr6:12581442-12581443
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12569231..12571551-chr6:12579613..12582187,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10948081	0.82[EUR][1000 genomes]
rs11970539	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11970595	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17698884	0.82[ASN][1000 genomes]
rs17698983	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17766596	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2327566	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2327567	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2504857	0.82[ASN][1000 genomes]
rs4526191	0.82[EUR][1000 genomes]
rs4535543	0.82[EUR][1000 genomes]
rs4623230	0.82[EUR][1000 genomes]
rs55655151	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55758472	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56285024	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56388817	0.82[ASN][1000 genomes]
rs58288781	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59222149	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67172952	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6911027	0.81[EUR][1000 genomes]
rs6911432	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6937502	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7751296	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7770994	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9357416	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470801	chr6:12559239-12666093	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv462638	chr6:12569231-12651249	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv600991	chr6:12569231-12651249	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12573800-12586000	Weak transcription	Pancreas	Pancrea
2	chr6:12574000-12594600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:12578200-12585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:12578200-12585400	Weak transcription	Placenta	Placenta
5	chr6:12578400-12585400	Weak transcription	Lung	lung
6	chr6:12578800-12582200	Weak transcription	HUVEC	blood vessel
7	chr6:12579000-12582600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:12579000-12585000	Weak transcription	Fetal Intestine Small	intestine
9	chr6:12579200-12585000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:12579400-12588200	Weak transcription	A549	lung
11	chr6:12579600-12582600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:12580000-12592800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:12580200-12585000	Weak transcription	NHEK	skin
14	chr6:12580200-12585200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:12581200-12584800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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