Variant report

Variant	rs17698884
Chromosome Location	chr6:12537326-12537327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17698983	0.86[ASN][1000 genomes]
rs17766596	0.88[ASN][1000 genomes]
rs2327566	0.88[ASN][1000 genomes]
rs2327567	0.88[ASN][1000 genomes]
rs2504857	1.00[ASN][1000 genomes]
rs2504906	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55655151	0.88[ASN][1000 genomes]
rs55758472	0.82[ASN][1000 genomes]
rs55779406	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56388817	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58288781	0.88[ASN][1000 genomes]
rs59222149	0.88[ASN][1000 genomes]
rs6911432	0.88[ASN][1000 genomes]
rs6937502	0.88[ASN][1000 genomes]
rs72833774	0.82[ASN][1000 genomes]
rs7745473	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9918358	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12531000-12538400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:12536600-12537800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:12536600-12540200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:12536800-12537600	Flanking Active TSS	HUVEC	blood vessel
5	chr6:12536800-12538200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr6:12537000-12539600	Enhancers	NH-A	brain
7	chr6:12537200-12538000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:12537200-12538000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:12537200-12538000	Enhancers	Stomach Mucosa	stomach
10	chr6:12537200-12538800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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