Variant report

Variant	rs55779406
Chromosome Location	chr6:12539238-12539239
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17698884	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2504906	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56285024	0.83[ASN][1000 genomes]
rs56388817	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67172952	0.83[ASN][1000 genomes]
rs6911027	0.85[ASN][1000 genomes]
rs7745473	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9296411	0.98[ASN][1000 genomes]
rs9296412	0.98[ASN][1000 genomes]
rs9918358	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12536600-12540200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:12537000-12539600	Enhancers	NH-A	brain
3	chr6:12537400-12539600	Enhancers	Osteobl	bone
4	chr6:12537400-12540000	Enhancers	Fetal Intestine Small	intestine
5	chr6:12537600-12540400	Enhancers	HUVEC	blood vessel
6	chr6:12537800-12540200	Enhancers	Fetal Intestine Large	intestine
7	chr6:12537800-12545200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:12538000-12540000	Enhancers	Placenta	Placenta
9	chr6:12538000-12540200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:12538000-12546200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:12538400-12539400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:12538600-12539600	Enhancers	Stomach Mucosa	stomach
13	chr6:12538800-12539400	Enhancers	Gastric	stomach
14	chr6:12538800-12539400	Enhancers	Lung	lung
15	chr6:12538800-12539600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:12538800-12539600	Enhancers	Pancreas	Pancrea
17	chr6:12538800-12539600	Flanking Active TSS	HepG2	liver
18	chr6:12538800-12539800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:12539000-12539400	Enhancers	Liver	Liver
20	chr6:12539000-12539400	Enhancers	Ovary	ovary
21	chr6:12539000-12539400	Enhancers	HSMM	muscle
22	chr6:12539200-12539400	Enhancers	Aorta	Aorta
23	chr6:12539200-12539400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:12539200-12539600	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:12539200-12539600	Enhancers	Right Atrium	heart
26	chr6:12539200-12539800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:12539200-12539800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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