Variant report

Variant	rs17766596
Chromosome Location	chr6:12558084-12558085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17698884	0.88[ASN][1000 genomes]
rs17698983	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2327566	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327567	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504857	0.88[ASN][1000 genomes]
rs2504888	0.81[EUR][1000 genomes]
rs2504892	0.80[EUR][1000 genomes]
rs55655151	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55758472	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56285024	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56388817	0.88[ASN][1000 genomes]
rs58288781	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59222149	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67172952	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6911027	0.86[EUR][1000 genomes]
rs6911432	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937502	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72833774	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12555800-12569800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:12557800-12558200	Enhancers	Osteobl	bone
3	chr6:12557800-12558800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:12558000-12558200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:12558000-12558200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:12558000-12558400	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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