Variant report

Variant	rs2508781
Chromosome Location	chr11:94270182-94270183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94268858..94270975-chr11:94276312..94278364,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134627	Chromatin interaction
ENSG00000196371	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2508783	0.83[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs489333	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs528193	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs538800	0.84[AMR][1000 genomes]
rs557888	0.82[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs560190	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs563882	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs587667	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs588774	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs591724	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs595672	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94266400-94271200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:94267600-94270200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:94267600-94270400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:94267600-94276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:94267600-94276400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:94267800-94270200	Weak transcription	Fetal Lung	lung
7	chr11:94267800-94270200	Weak transcription	Right Atrium	heart
8	chr11:94268000-94270200	Weak transcription	Adipose Nuclei	Adipose
9	chr11:94268000-94270600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:94268600-94271200	Enhancers	Stomach Mucosa	stomach
11	chr11:94268800-94271400	Enhancers	Fetal Intestine Small	intestine
12	chr11:94268800-94273400	Enhancers	Fetal Intestine Large	intestine
13	chr11:94268800-94273800	Enhancers	Duodenum Mucosa	Duodenum
14	chr11:94269200-94270200	Weak transcription	Small Intestine	intestine
15	chr11:94269400-94270200	Enhancers	Osteobl	bone
16	chr11:94269400-94271000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:94269400-94271200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:94269600-94270400	Enhancers	Aorta	Aorta
19	chr11:94269600-94271000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:94269600-94271200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:94269800-94270800	Weak transcription	HSMMtube	muscle
22	chr11:94269800-94271200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr11:94270000-94270400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:94270000-94270400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
25	chr11:94270000-94270800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:94270000-94271200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:94270000-94271200	Enhancers	HMEC	breast
28	chr11:94270000-94271200	Enhancers	HSMM	muscle

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