Variant report

Variant	rs557888
Chromosome Location	chr11:94258480-94258481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2508781	0.82[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2508783	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs489333	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs528193	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs538800	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs560190	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs563882	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs587667	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588774	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs591724	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs595672	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94246800-94259000	Weak transcription	Stomach Mucosa	stomach
3	chr11:94247200-94258800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:94253400-94258800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:94253600-94258800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:94254400-94261800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:94257000-94260800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:94257400-94260600	Enhancers	NHEK	skin
9	chr11:94257400-94262400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:94257800-94259000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:94257800-94260200	Enhancers	HMEC	breast
12	chr11:94258200-94259200	Weak transcription	Placenta	Placenta
13	chr11:94258400-94259200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr11:94258400-94260000	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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