Variant report

Variant	rs2508783
Chromosome Location	chr11:94269711-94269712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94268238..94270129-chr11:94275344..94277340,2	MCF-7	breast:
2	chr11:94253806..94255859-chr11:94267409..94270177,3	K562	blood:
3	chr11:94268858..94270975-chr11:94276312..94278364,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196371	Chromatin interaction
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10831222	0.83[MEX][hapmap];0.81[TSI][hapmap]
rs2155209	0.83[MEX][hapmap];0.83[TSI][hapmap]
rs2508781	0.83[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758787	0.83[MEX][hapmap];0.81[TSI][hapmap]
rs4459257	0.83[TSI][hapmap]
rs489333	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs528193	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs538800	0.84[AMR][1000 genomes]
rs546439	0.83[TSI][hapmap]
rs554715	0.85[TSI][hapmap]
rs557888	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs560190	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs563882	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs584531	0.83[TSI][hapmap]
rs587667	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs588774	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs591724	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs595672	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs601391	0.85[TSI][hapmap]
rs610611	0.83[MEX][hapmap];0.85[TSI][hapmap]
rs646130	0.83[TSI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2508783	MRE11A	cis	parietal	SCAN
rs2508783	MRE11A	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94266400-94271200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:94267600-94270200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:94267600-94270400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:94267600-94276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:94267600-94276400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:94267800-94270200	Weak transcription	Fetal Lung	lung
7	chr11:94267800-94270200	Weak transcription	Right Atrium	heart
8	chr11:94268000-94269800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:94268000-94270200	Weak transcription	Adipose Nuclei	Adipose
10	chr11:94268000-94270600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr11:94268400-94270000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:94268600-94271200	Enhancers	Stomach Mucosa	stomach
13	chr11:94268800-94271400	Enhancers	Fetal Intestine Small	intestine
14	chr11:94268800-94273400	Enhancers	Fetal Intestine Large	intestine
15	chr11:94268800-94273800	Enhancers	Duodenum Mucosa	Duodenum
16	chr11:94269200-94270000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:94269200-94270200	Weak transcription	Small Intestine	intestine
18	chr11:94269400-94270000	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr11:94269400-94270200	Enhancers	Osteobl	bone
20	chr11:94269400-94271000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:94269400-94271200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr11:94269600-94269800	Enhancers	HSMMtube	muscle
23	chr11:94269600-94270400	Enhancers	Aorta	Aorta
24	chr11:94269600-94271000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr11:94269600-94271200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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