Variant report

Variant	rs588774
Chromosome Location	chr11:94260250-94260251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94259391..94261034-chr11:94261727..94264197,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10831222	0.80[CHD][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs10831244	0.81[YRI][hapmap]
rs10831246	0.84[YRI][hapmap]
rs2155099	0.80[YRI][hapmap]
rs2155209	0.88[CHD][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs2508781	0.83[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2508783	0.87[ASW][hapmap];1.00[CEU][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3758787	0.83[CHD][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap]
rs4459257	0.88[CHD][hapmap];0.86[TSI][hapmap]
rs489333	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs505417	0.85[YRI][hapmap]
rs528193	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs538800	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs546439	0.82[CHD][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap]
rs554715	0.86[CHD][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs557888	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs560190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563882	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584531	0.82[CHD][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap]
rs587667	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs591724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs595672	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs601391	0.89[CHD][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs610611	0.85[CHD][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap]
rs646130	0.82[CHD][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs588774	MRE11A	cis	cerebellum	SCAN
rs588774	MRE11A	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94254400-94261800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:94257000-94260800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:94257400-94260600	Enhancers	NHEK	skin
5	chr11:94257400-94262400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:94258800-94260800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:94258800-94260800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:94259000-94260400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:94259000-94260600	Enhancers	Osteobl	bone
10	chr11:94259000-94262600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:94259200-94260400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:94259200-94265400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:94259400-94261000	Enhancers	HSMMtube	muscle
14	chr11:94259600-94260600	Enhancers	HSMM	muscle
15	chr11:94259600-94266600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:94260200-94260600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:94260200-94261600	Weak transcription	HMEC	breast
18	chr11:94260200-94268800	Weak transcription	Fetal Intestine Small	intestine

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