Variant report

Variant	rs10831246
Chromosome Location	chr11:94322695-94322696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10765687	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10831243	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10831245	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020851	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs1257380	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs1815826	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2155099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2155100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4354655	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4543942	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4753144	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs505417	0.80[YRI][hapmap]
rs556489	0.85[EUR][1000 genomes]
rs591584	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs593690	0.90[CHB][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes]
rs608972	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs638397	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs6483348	0.88[EUR][1000 genomes]
rs649973	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes]
rs7102518	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7105524	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7106117	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7107559	0.81[CHB][hapmap]
rs7110167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7111231	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7111719	0.82[CHB][hapmap]
rs7120587	0.82[CHB][hapmap]
rs7120907	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7126782	0.81[CHB][hapmap]
rs7926234	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs7952351	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10831246	PIWIL4	cis	multi-tissue	Pritchard
rs10831246	FUT4	Cis_1M	lymphoblastoid	RTeQTL
rs10831246	FUT4	cis	multi-tissue	Pritchard

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94284000-94323400	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
3	chr11:94303000-94325400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:94307600-94324000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:94308200-94342800	Weak transcription	K562	blood
6	chr11:94308600-94335400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:94309200-94342600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:94312800-94325200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:94313800-94324000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:94315200-94326000	Weak transcription	Brain Angular Gyrus	brain
11	chr11:94316200-94328400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:94317600-94333600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:94317600-94335800	Weak transcription	Primary B cells from cord blood	blood
14	chr11:94317600-94335800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:94317600-94336200	Weak transcription	Esophagus	oesophagus
16	chr11:94318000-94335800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:94318400-94328000	Weak transcription	GM12878-XiMat	blood
18	chr11:94319200-94324600	Strong transcription	Aorta	Aorta
19	chr11:94319800-94323200	Enhancers	Placenta	Placenta
20	chr11:94320200-94326400	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr11:94320400-94324600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:94320400-94326000	Weak transcription	Brain Substantia Nigra	brain
23	chr11:94320600-94326000	Weak transcription	NHDF-Ad	bronchial
24	chr11:94320600-94333400	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr11:94320800-94324400	Strong transcription	Fetal Intestine Large	intestine
26	chr11:94320800-94324800	Strong transcription	Fetal Intestine Small	intestine
27	chr11:94320800-94325400	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:94321000-94331400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:94321000-94334800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:94321000-94336400	Weak transcription	Small Intestine	intestine
31	chr11:94321000-94344800	Weak transcription	Lung	lung
32	chr11:94321400-94342600	Weak transcription	Fetal Brain Female	brain
33	chr11:94321600-94324800	Strong transcription	Adipose Nuclei	Adipose
34	chr11:94321600-94325600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr11:94322000-94323200	Strong transcription	Colon Smooth Muscle	Colon
36	chr11:94322000-94325000	Strong transcription	Stomach Smooth Muscle	stomach
37	chr11:94322000-94325200	Enhancers	Placenta Amnion	Placenta Amnion
38	chr11:94322000-94325600	Weak transcription	Liver	Liver
39	chr11:94322200-94323600	Strong transcription	Rectal Smooth Muscle	rectum
40	chr11:94322200-94324400	Strong transcription	Fetal Stomach	stomach
41	chr11:94322200-94324600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:94322200-94325000	Strong transcription	Ovary	ovary
43	chr11:94322200-94329400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr11:94322200-94330800	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr11:94322200-94343600	Weak transcription	Psoas Muscle	Psoas
46	chr11:94322400-94322800	Strong transcription	Colonic Mucosa	Colon
47	chr11:94322400-94322800	Strong transcription	Gastric	stomach
48	chr11:94322400-94323000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:94322400-94324600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:94322400-94324600	Strong transcription	Pancreas	Pancrea

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