Variant report

Variant	rs649973
Chromosome Location	chr11:94333874-94333875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94332376..94335627-chr11:94338350..94340794,4	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10831243	0.83[EUR][1000 genomes]
rs10831244	0.85[CEU][hapmap];0.91[CHB][hapmap];0.83[EUR][1000 genomes]
rs10831245	0.84[EUR][1000 genomes]
rs10831246	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[EUR][1000 genomes]
rs11020851	0.83[EUR][1000 genomes]
rs1257380	0.83[EUR][1000 genomes]
rs1815826	0.80[CEU][hapmap];0.90[CHB][hapmap];0.82[EUR][1000 genomes]
rs2155099	0.83[CEU][hapmap];0.90[CHB][hapmap];0.85[EUR][1000 genomes]
rs2155100	0.83[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs4354655	0.85[EUR][1000 genomes]
rs4543942	0.85[EUR][1000 genomes]
rs489591	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs556489	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591584	0.83[EUR][1000 genomes]
rs593690	0.84[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs608972	0.95[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs638397	0.81[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6483348	0.83[EUR][1000 genomes]
rs694731	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs695043	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7102518	0.84[EUR][1000 genomes]
rs7105524	0.88[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7106117	0.82[EUR][1000 genomes]
rs7110167	0.84[CEU][hapmap];0.91[CHB][hapmap];0.85[EUR][1000 genomes]
rs7111231	0.85[EUR][1000 genomes]
rs7120907	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7926234	0.81[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs649973	FUT4	cis	multi-tissue	Pritchard
rs649973	FUT4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
2	chr11:94308200-94342800	Weak transcription	K562	blood
3	chr11:94308600-94335400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:94309200-94342600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:94317600-94335800	Weak transcription	Primary B cells from cord blood	blood
6	chr11:94317600-94335800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:94317600-94336200	Weak transcription	Esophagus	oesophagus
8	chr11:94318000-94335800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:94321000-94334800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:94321000-94336400	Weak transcription	Small Intestine	intestine
11	chr11:94321000-94344800	Weak transcription	Lung	lung
12	chr11:94321400-94342600	Weak transcription	Fetal Brain Female	brain
13	chr11:94322200-94343600	Weak transcription	Psoas Muscle	Psoas
14	chr11:94322600-94341600	Weak transcription	Right Ventricle	heart
15	chr11:94322800-94340800	Weak transcription	Colonic Mucosa	Colon
16	chr11:94323000-94341000	Weak transcription	Gastric	stomach
17	chr11:94323200-94335200	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:94323600-94351800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:94324400-94335000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:94324600-94343600	Weak transcription	Spleen	Spleen
21	chr11:94324800-94336000	Weak transcription	Brain Anterior Caudate	brain
22	chr11:94324800-94341000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:94325000-94341000	Weak transcription	Ovary	ovary
24	chr11:94325000-94344400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:94325200-94335400	Weak transcription	Stomach Mucosa	stomach
26	chr11:94325200-94336200	Weak transcription	Fetal Kidney	kidney
27	chr11:94325200-94357600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr11:94325800-94334200	Strong transcription	Fetal Intestine Large	intestine
29	chr11:94326400-94335800	Weak transcription	Brain Hippocampus Middle	brain
30	chr11:94326400-94338400	Weak transcription	NHDF-Ad	bronchial
31	chr11:94326400-94342400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:94326600-94336000	Weak transcription	Brain Substantia Nigra	brain
33	chr11:94328600-94336400	Weak transcription	Brain Germinal Matrix	brain
34	chr11:94329000-94341000	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:94329200-94343000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr11:94329400-94342200	Weak transcription	Primary T cells from cord blood	blood
37	chr11:94330200-94334600	Weak transcription	Pancreas	Pancrea
38	chr11:94330200-94341000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:94330800-94334800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:94331400-94336000	Weak transcription	Brain Angular Gyrus	brain
41	chr11:94332600-94334800	ZNF genes & repeats	Fetal Intestine Small	intestine
42	chr11:94332600-94342400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:94333000-94343200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr11:94333000-94346200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr11:94333200-94334200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:94333200-94338400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr11:94333200-94341000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr11:94333200-94343000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr11:94333400-94335000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr11:94333400-94335000	Weak transcription	Fetal Muscle Trunk	muscle

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