Variant report

Variant	rs1815826
Chromosome Location	chr11:94307285-94307286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94299277..94302008-chr11:94304301..94308531,3	K562	blood:

Variant related genes	Relation type
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10765687	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10831243	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831244	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831245	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831246	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11020851	0.82[CEU][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs1257380	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs2155099	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2155100	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4354655	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4543942	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4753144	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs556489	0.82[EUR][1000 genomes]
rs591584	0.82[CEU][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs593690	0.86[CHB][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.80[AMR][1000 genomes]
rs608972	0.91[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap]
rs638397	0.91[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap]
rs6483348	0.84[EUR][1000 genomes]
rs649973	0.80[CEU][hapmap];0.90[CHB][hapmap];0.82[EUR][1000 genomes]
rs7102518	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7105524	0.96[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7106117	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7110167	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7111231	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7120907	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7926234	0.82[CEU][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs7952351	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1815826	FUT4	cis	multi-tissue	Pritchard
rs1815826	PIWIL4	cis	lymphoblastoid	seeQTL
rs1815826	FUT4	Cis_1M	lymphoblastoid	RTeQTL
rs1815826	PIWIL4	cis	multi-tissue	Pritchard
rs1815826	FUT4	cis	lymphoblastoid	seeQTL

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94281000-94319200	Weak transcription	Aorta	Aorta
2	chr11:94282200-94317400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:94282200-94322600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:94282600-94322200	Weak transcription	Fetal Stomach	stomach
5	chr11:94284000-94323400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:94291800-94322000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:94293000-94322400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:94293600-94322400	Weak transcription	Gastric	stomach
9	chr11:94296600-94307800	Weak transcription	Right Atrium	heart
10	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
11	chr11:94297200-94307400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:94297200-94307400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:94297200-94322200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:94297400-94310000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:94298400-94307400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:94299800-94307400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:94300800-94307600	Weak transcription	Fetal Intestine Large	intestine
18	chr11:94302200-94307400	Weak transcription	K562	blood
19	chr11:94302200-94307600	Weak transcription	Pancreas	Pancrea
20	chr11:94303000-94325400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:94303600-94314600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr11:94304400-94319600	Weak transcription	Fetal Intestine Small	intestine
23	chr11:94306000-94307400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr11:94307000-94307400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:94307000-94307400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:94307000-94307600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr11:94307000-94308200	Enhancers	Placenta Amnion	Placenta Amnion
28	chr11:94307200-94307400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:94307200-94307400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:94307200-94307400	Enhancers	NHDF-Ad	bronchial
31	chr11:94307200-94307400	Enhancers	Osteobl	bone
32	chr11:94307200-94308200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
33	chr11:94307200-94308400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:94307200-94309400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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