Variant report

Variant	rs2155100
Chromosome Location	chr11:94321398-94321399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94311343..94313725-chr11:94319457..94321521,2	MCF-7	breast:
2	chr11:94284634..94286699-chr11:94320127..94322238,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10765687	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10831243	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10831244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831245	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020851	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs1257380	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1815826	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2155099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4354655	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4543942	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4753144	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs556489	0.82[EUR][1000 genomes]
rs591584	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs593690	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs608972	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs638397	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs6483348	0.85[EUR][1000 genomes]
rs649973	0.83[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs7102518	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7105524	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7106117	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107559	0.81[CHB][hapmap]
rs7110167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111231	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111719	0.81[CHB][hapmap]
rs7120587	0.81[CHB][hapmap]
rs7120907	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7126782	0.81[CHB][hapmap]
rs7926234	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs7952351	0.93[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2155100	FUT4	cis	multi-tissue	Pritchard
rs2155100	FUT4	Cis_1M	lymphoblastoid	RTeQTL
rs2155100	PIWIL4	cis	multi-tissue	Pritchard

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94282200-94322600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:94282600-94322200	Weak transcription	Fetal Stomach	stomach
3	chr11:94284000-94323400	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:94291800-94322000	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:94293000-94322400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:94293600-94322400	Weak transcription	Gastric	stomach
7	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
8	chr11:94297200-94322200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:94303000-94325400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:94307600-94324000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:94308000-94322200	Weak transcription	Ovary	ovary
12	chr11:94308000-94322400	Weak transcription	Pancreas	Pancrea
13	chr11:94308200-94342800	Weak transcription	K562	blood
14	chr11:94308600-94335400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:94309200-94322200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:94309200-94342600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr11:94311600-94322400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:94312800-94325200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:94313800-94324000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr11:94315200-94326000	Weak transcription	Brain Angular Gyrus	brain
21	chr11:94316200-94328400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:94317400-94322400	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:94317600-94321600	Weak transcription	Adipose Nuclei	Adipose
24	chr11:94317600-94333600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:94317600-94335800	Weak transcription	Primary B cells from cord blood	blood
26	chr11:94317600-94335800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:94317600-94336200	Weak transcription	Esophagus	oesophagus
28	chr11:94317800-94322200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr11:94317800-94322400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:94318000-94322000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:94318000-94322400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:94318000-94335800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:94318400-94328000	Weak transcription	GM12878-XiMat	blood
34	chr11:94318600-94322200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr11:94318800-94321600	Enhancers	Placenta Amnion	Placenta Amnion
36	chr11:94319200-94322400	Weak transcription	Primary T cells from cord blood	blood
37	chr11:94319200-94324600	Strong transcription	Aorta	Aorta
38	chr11:94319800-94323200	Enhancers	Placenta	Placenta
39	chr11:94320000-94322400	Weak transcription	Colonic Mucosa	Colon
40	chr11:94320200-94326400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr11:94320400-94324600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:94320400-94326000	Weak transcription	Brain Substantia Nigra	brain
43	chr11:94320600-94321600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:94320600-94326000	Weak transcription	NHDF-Ad	bronchial
45	chr11:94320600-94333400	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:94320800-94324400	Strong transcription	Fetal Intestine Large	intestine
47	chr11:94320800-94324800	Strong transcription	Fetal Intestine Small	intestine
48	chr11:94320800-94325400	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:94321000-94321600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr11:94321000-94331400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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