Variant report

Variant	rs10831244
Chromosome Location	chr11:94315307-94315308
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94310489..94312156-chr11:94313831..94316959,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10765687	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10831243	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10831245	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11020851	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs1257380	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs1815826	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2155099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2155100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4354655	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4543942	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4753144	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs556489	0.83[EUR][1000 genomes]
rs591584	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs593690	0.87[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs608972	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs638397	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs6483348	0.85[EUR][1000 genomes]
rs649973	0.85[CEU][hapmap];0.91[CHB][hapmap];0.83[EUR][1000 genomes]
rs7102518	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105524	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7106117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7110167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111231	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120907	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7926234	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs7952351	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10831244	PIWIL4	cis	multi-tissue	Pritchard
rs10831244	FUT4	cis	multi-tissue	Pritchard
rs10831244	FUT4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94281000-94319200	Weak transcription	Aorta	Aorta
2	chr11:94282200-94317400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:94282200-94322600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:94282600-94322200	Weak transcription	Fetal Stomach	stomach
5	chr11:94284000-94323400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:94291800-94322000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:94293000-94322400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:94293600-94322400	Weak transcription	Gastric	stomach
9	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
10	chr11:94297200-94322200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:94303000-94325400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:94304400-94319600	Weak transcription	Fetal Intestine Small	intestine
13	chr11:94307600-94324000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:94307800-94316800	Weak transcription	Fetal Intestine Large	intestine
15	chr11:94308000-94322200	Weak transcription	Ovary	ovary
16	chr11:94308000-94322400	Weak transcription	Pancreas	Pancrea
17	chr11:94308200-94342800	Weak transcription	K562	blood
18	chr11:94308600-94317000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:94308600-94335400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:94309200-94322200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:94309200-94342600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr11:94310400-94316800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:94311600-94322400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:94312200-94316600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:94312200-94316600	Weak transcription	HUVEC	blood vessel
26	chr11:94312400-94320200	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:94312800-94325200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:94313800-94324000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr11:94314400-94316600	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr11:94314600-94315400	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr11:94314600-94315600	Flanking Active TSS	GM12878-XiMat	blood
32	chr11:94314600-94318400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr11:94314800-94315800	Enhancers	Primary B cells from cord blood	blood
34	chr11:94315200-94315400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:94315200-94315400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:94315200-94315600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:94315200-94317400	Weak transcription	Adipose Nuclei	Adipose
38	chr11:94315200-94317800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr11:94315200-94326000	Weak transcription	Brain Angular Gyrus	brain

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