Variant report

Variant	rs10765687
Chromosome Location	chr11:94306402-94306403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94299277..94302008-chr11:94304301..94308531,3	K562	blood:

Variant related genes	Relation type
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10831243	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10831244	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10831245	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10831246	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11020851	0.81[EUR][1000 genomes]
rs1257380	0.81[EUR][1000 genomes]
rs1815826	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2155099	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2155100	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4354655	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4543942	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4753144	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs591584	0.82[EUR][1000 genomes]
rs6483348	0.81[EUR][1000 genomes]
rs7102518	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7105524	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7106117	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7110167	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7111231	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7120907	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7926234	0.86[EUR][1000 genomes]
rs7952351	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10765687	FUT4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94281000-94319200	Weak transcription	Aorta	Aorta
2	chr11:94282200-94317400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:94282200-94322600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:94282600-94322200	Weak transcription	Fetal Stomach	stomach
5	chr11:94284000-94323400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:94291800-94322000	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:94293000-94322400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:94293600-94322400	Weak transcription	Gastric	stomach
9	chr11:94296600-94307800	Weak transcription	Right Atrium	heart
10	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
11	chr11:94297200-94307400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:94297200-94307400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr11:94297200-94322200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:94297400-94310000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:94298200-94307000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:94298400-94307400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:94299800-94307400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:94300800-94307600	Weak transcription	Fetal Intestine Large	intestine
19	chr11:94301600-94307200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:94302200-94307400	Weak transcription	K562	blood
21	chr11:94302200-94307600	Weak transcription	Pancreas	Pancrea
22	chr11:94303000-94325400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:94303600-94314600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:94304400-94319600	Weak transcription	Fetal Intestine Small	intestine
25	chr11:94306000-94307200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr11:94306000-94307400	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links