Variant report

Variant	rs1257380
Chromosome Location	chr11:94326283-94326284
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94324831..94328074-chr11:94329918..94333130,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10741490	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10765687	0.81[EUR][1000 genomes]
rs10831239	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10831243	0.86[EUR][1000 genomes]
rs10831244	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs10831245	0.87[EUR][1000 genomes]
rs10831246	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs11020832	0.91[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs11020851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1271070	0.86[ASN][1000 genomes]
rs1815826	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs2155099	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs2155100	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs4354655	0.88[EUR][1000 genomes]
rs4543942	0.88[EUR][1000 genomes]
rs556489	0.83[EUR][1000 genomes]
rs591584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6483346	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6483348	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs649973	0.83[EUR][1000 genomes]
rs7102518	0.87[EUR][1000 genomes]
rs7105524	0.84[CEU][hapmap];0.94[EUR][1000 genomes]
rs7106117	0.85[EUR][1000 genomes]
rs7110167	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs7111231	0.88[EUR][1000 genomes]
rs7120907	0.94[EUR][1000 genomes]
rs7124618	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7926082	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7926234	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7927312	0.90[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7927463	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs7929056	0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs7946385	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7950626	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs9919636	0.82[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1257380	FUT4	Cis_1M	lymphoblastoid	RTeQTL
rs1257380	FUT4	cis	multi-tissue	Pritchard

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94296600-94344800	Weak transcription	Left Ventricle	heart
2	chr11:94308200-94342800	Weak transcription	K562	blood
3	chr11:94308600-94335400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:94309200-94342600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:94316200-94328400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:94317600-94333600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:94317600-94335800	Weak transcription	Primary B cells from cord blood	blood
8	chr11:94317600-94335800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:94317600-94336200	Weak transcription	Esophagus	oesophagus
10	chr11:94318000-94335800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:94318400-94328000	Weak transcription	GM12878-XiMat	blood
12	chr11:94320200-94326400	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr11:94320600-94333400	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:94321000-94331400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:94321000-94334800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:94321000-94336400	Weak transcription	Small Intestine	intestine
17	chr11:94321000-94344800	Weak transcription	Lung	lung
18	chr11:94321400-94342600	Weak transcription	Fetal Brain Female	brain
19	chr11:94322200-94329400	Strong transcription	Duodenum Mucosa	Duodenum
20	chr11:94322200-94330800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr11:94322200-94343600	Weak transcription	Psoas Muscle	Psoas
22	chr11:94322600-94341600	Weak transcription	Right Ventricle	heart
23	chr11:94322800-94340800	Weak transcription	Colonic Mucosa	Colon
24	chr11:94323000-94341000	Weak transcription	Gastric	stomach
25	chr11:94323200-94328400	Weak transcription	Placenta	Placenta
26	chr11:94323200-94335200	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:94323600-94351800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:94324400-94326800	Weak transcription	Fetal Stomach	stomach
29	chr11:94324400-94335000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:94324600-94326800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:94324600-94328200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:94324600-94328400	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:94324600-94328400	Weak transcription	Pancreas	Pancrea
34	chr11:94324600-94332600	Weak transcription	Aorta	Aorta
35	chr11:94324600-94332600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr11:94324600-94333000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:94324600-94343600	Weak transcription	Spleen	Spleen
38	chr11:94324800-94326800	Weak transcription	Fetal Intestine Small	intestine
39	chr11:94324800-94328200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr11:94324800-94328400	Weak transcription	Adipose Nuclei	Adipose
41	chr11:94324800-94328400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:94324800-94330000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr11:94324800-94336000	Weak transcription	Brain Anterior Caudate	brain
44	chr11:94324800-94341000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr11:94325000-94328200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:94325000-94341000	Weak transcription	Ovary	ovary
47	chr11:94325000-94344400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:94325200-94328000	Weak transcription	Primary T cells from cord blood	blood
49	chr11:94325200-94335400	Weak transcription	Stomach Mucosa	stomach
50	chr11:94325200-94336200	Weak transcription	Fetal Kidney	kidney

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